Stars
Immunotherapy response prediction using pathway knowledge-informed graph neural network
Using MASST or fastMASST, adding metadata onto a tree ontology for microbes
This repository includes the code used in our multiomics BMI study.
A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.
High dimensional weighted gene co-expression network analysis
Book about interpretable machine learning
A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.
Analyses in R and Python Using curatedMetagenomicData
Amplicon sequence processing workflow using QIIME 2 and Snakemake
A curated list of awesome R packages, frameworks and software.
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox
Build, share, and embed visualizations of metabolic pathways.
这是我学习 PyTorch 的笔记对应的代码，点击查看 PyTorch 笔记在线电子书
🌟 The Multi-Agent Framework: First AI Software Company, Towards Natural Language Programming
Python package for building and analyzing models using ModelSEED
Text and supporting code for Think Stats, 2nd Edition
COBRApy is a package for constraint-based modeling of metabolic networks.
CarveMe: genome-scale metabolic model reconstruction
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies