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doc-ANNOVAR Public
Forked from WGLab/doc-ANNOVARDocumentation for the ANNOVAR software
UpdatedNov 28, 2023 -
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compare_genomes Public
Forked from jeffersonfparil/compare_genomesA comparative genomics workflow using Nextflow, conda, Julia and R
Nextflow GNU General Public License v3.0 UpdatedNov 10, 2023 -
North_American_Vitis_Pangenome Public
Forked from laowang1992/North_American_Vitis_PangenomeConstruct and Analyze the North American Vitis pangenome
R UpdatedJul 3, 2023 -
pyGenomeViz Public
Forked from wangchengww/pyGenomeVizA genome visualization python package for comparative genomics
Python MIT License UpdatedMar 20, 2023 -
ortho_parser Public
Forked from wangchengww/ortho_parserScripts to parse OrthoFinder output
Python GNU General Public License v3.0 UpdatedSep 23, 2022 -
Sus_cebifrons_genome Public
Forked from llq0325/Sus_cebifrons_genomeCode for the assembly, annotation and comparative analyses of sus cebifrons genome
Perl UpdatedMay 18, 2022 -
mikk_genome Public
Forked from IanBrettell/mikk_genomeFor the paper describing the MIKK Panel and its genome
HTML UpdatedFeb 9, 2022 -
monkParakeet Public
Forked from lurebgi/monkParakeetchromosome assembly and neo-sex chromosome of monk parakeet
Shell UpdatedJan 17, 2022 -
biotrans_cli Public
Forked from silvewheat/biotrans_cliBiological Data file format transformation using Command Line Interface scripts.
Python UpdatedDec 27, 2021 -
scripts Public
Forked from speciationgenomics/scriptsScripts for analysis used during the course
R UpdatedDec 15, 2021 -
superSFS Public
Forked from xhchauvet/superSFSThis is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What you should prepare is the phased vcf file containg the data o…
Python UpdatedDec 2, 2021 -
HyDe Public
Forked from pblischak/HyDeHybridization detection using phylogenetic invariants
Python GNU General Public License v3.0 UpdatedNov 29, 2021 -
Chloranthus-sessilifolius-genome Public
Forked from yongzhiyang2012/Chloranthus-sessilifolius-genomePython UpdatedNov 26, 2021 -
VCF2ArlequinDiploid Public
Forked from Sandman2127/VCF2ArlequinDiploidA script designed to convert GBS/RAD/DNASEQ vcf data to arlequin diploid .arp format files
Python UpdatedOct 26, 2021 -
NAM-genomes Public
Forked from YTLogos/NAM-genomesDetailed bioinformatics scripts and methods used in the NAM genome paper.
R UpdatedOct 19, 2021 -
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RectChr Public
Forked from BGI-shenzhen/RectChrMulti-level visualization of genomic statistical variables on rectangular chromosomes
Perl UpdatedOct 8, 2021 -
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1kfg_phylo_paper Public
Forked from 1KFG/1kfg_phylo_paper1000 Fungal Genomes Phylogeny and phylogenomics paper
Shell UpdatedSep 29, 2021 -
MitoFlex Public
Forked from Prunoideae/MitoFlexA mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.
Python GNU General Public License v3.0 UpdatedSep 22, 2021 -
DrosEU_pipeline Public
Forked from capoony/DrosEU_pipelineBioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
Python Apache License 2.0 UpdatedAug 18, 2021 -
synvisio Public
Forked from kiranbandi/synvisioSynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.
JavaScript MIT License UpdatedJul 29, 2021 -
seq-scripts Public
Forked from thackl/seq-scriptsscripts for sequence and feature conversion, annotation, analysis ...
Perl MIT License UpdatedJul 27, 2021 -
AGAT Public
Forked from NBISweden/AGATAnother Gtf/Gff Analysis Toolkit
Perl GNU General Public License v3.0 UpdatedJul 27, 2021 -
jcvi Public
Forked from tanghaibao/jcviPython library to facilitate genome assembly, annotation, and comparative genomics
Python BSD 2-Clause "Simplified" License UpdatedJul 22, 2021 -
tiny Public
Forked from kango2/tinyWhole genome alignments using LastZ software in vertebrate species. Code (1) drives embarrassingly parallel execution of commands, (2) merge output into sensible formats and (3) provides ways to dr…
R MIT License UpdatedJul 11, 2021 -
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