This repository contains the jupyter lab notebooks of analysis and plotting after performing pySpade analysis of breast cancer associated enhancers perturbations.
- Python (3.7 +)
- Numpy (1.16 +)
- Pandas (0.25 +)
- Scipy (1.1 +)
- Matplotlib (3.3 +)
- pyCircos (0.3.0 +)
- GSE223812: Bulk ATAC-seq of breast cancer cell lines.
- GSE224986: Single cell libraries.
- GSE228332: Bulk RNA-seq validation experiments.
- First Author: Yihan Wang
[email protected]
- Corresponding Author: Gary Hon
[email protected]