A plugin for doing manual instance segmentation.

Maybe very similar to zarpaint

git clone https://github.com/Hekstra-Lab/napari-labeller
cd napari-labeller
conda create -n labeller -c conda-forge python=3.9
conda activate labeller
pip install "napari[all]"
pip install -e .

You can then launch napari with extension active by running:

napari -w napari-labeller

• q : erase

• w : fill

• e : paint

• r : pick

• t : create new label

• scroll : modify brush size when in paint mode

• Shift + Scroll : scrub through time points

Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.

Distributed under the terms of the BSD-3 license, "napari-labeller" is free and open source software

If you encounter any problems, please file an issue along with a detailed description.

This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.