Skip to content
@GuignardLab

Guignard Lab

README.md

Computer Science, Morphogenesis and Variability ‼️Open positions‼️

👋 Hello and welcome to the GitHub of the Guignard Lab or the Computer Science, Morphogenesis and Variability group 👋

We are theoreticians from many different backgrounds (🧑‍🔬biology, 🧑‍💻computer science, physics or mathematics). We work at trying to 🕵️better our understanding of embryo formation. We develop novel methods to quantify the development at the single cell scale using recordings from 🔬fluorescence microscopy🔬 and 🧬spatial omics🧬 and many different model and non-model organisms: 🐭mouse, 🦐Parhyale or gastruloids for example.

We mainly code in 🐍 Python 🐍 but are open to any open source language.

You can find more information about our research on our webpage or on the group page of the IBDM website

Current team members:

Former team members:

Pinned Loading

  1. CenTuri-Course CenTuri-Course Public

    Python Course

    Jupyter Notebook 2 5

  2. sc3D sc3D Public

    Spatial Single Cell transcriptomic library

    Jupyter Notebook 16

  3. napari-sc3D-viewer napari-sc3D-viewer Public

    A plugin to visualise 3D spatial single cell omics

    Python 20 2

  4. registration-tools registration-tools Public

    Python 2 1

Repositories

Showing 10 of 19 repositories
  • LineageTree Public

    Module to read and "work" with lineage trees

    GuignardLab/LineageTree’s past year of commit activity
    Python 5 MIT 2 0 2 Updated Jul 28, 2024
  • registration-tools Public
    GuignardLab/registration-tools’s past year of commit activity
    Python 2 1 0 2 Updated Jul 2, 2024
  • Two-Channels-Correlation Public
    GuignardLab/Two-Channels-Correlation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 31, 2024
  • napari-sc3D-viewer Public

    A plugin to visualise 3D spatial single cell omics

    GuignardLab/napari-sc3D-viewer’s past year of commit activity
    Python 20 MIT 2 0 0 Updated Apr 3, 2024
  • sc3D Public

    Spatial Single Cell transcriptomic library

    GuignardLab/sc3D’s past year of commit activity
    Jupyter Notebook 16 MIT 0 0 0 Updated Mar 19, 2024
  • CenTuri-Course Public

    Python Course

    GuignardLab/CenTuri-Course’s past year of commit activity
    Jupyter Notebook 2 MIT 5 0 0 Updated Feb 21, 2024
  • attestation Public
    GuignardLab/attestation’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 13, 2024
  • .github Public
    GuignardLab/.github’s past year of commit activity
    0 0 0 0 Updated Feb 7, 2024
  • Simple-Track-Builder Public
    GuignardLab/Simple-Track-Builder’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 15, 2023
  • CMB-M2-Coding-Turing Public
    GuignardLab/CMB-M2-Coding-Turing’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 26, 2023
View all repositories

Top languages

Loading…

Most used topics

Loading…