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642 results for source starred repositories
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tools and notes for spatial omics

217 45 Updated Apr 1, 2024

Fast and Memory-Efficient Principal Component Analysis All in One

C++ 38 2 Updated Oct 2, 2024

Draw Network with Data

R 6 Updated Sep 18, 2024

Draw flow chart based on ggtree

R 8 Updated Sep 18, 2024

single cell to pathway

R 6 Updated Aug 10, 2024

A Lightweight Toolkit for Single-Cell Data Analysis

R 2 1 Updated Oct 2, 2024

Visualizing sequence break point

R 7 Updated Jul 20, 2024

A repository as a discussion place for extending the ggplot2 R package

57 Updated Sep 25, 2024

Tutorial for Learning 'ggtree'

Makefile 7 Updated Jul 18, 2024

A book created by xiaolai with the help of ChatGPT and its TTS

Jupyter Notebook 912 117 Updated Jun 26, 2024

A generative speech model for daily dialogue.

Python 31,172 3,389 Updated Sep 21, 2024

omics data analysis using clusterProfiler ;)

R 10 8 Updated Jun 6, 2024

🕸️Exploring phylomorphospace using 'ggtree'

R 5 2 Updated Sep 7, 2024

Simple GO Enrichment Analysis

R 4 Updated Feb 12, 2024

AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

C++ 264 37 Updated Sep 11, 2024

Discover and annotate the virome

Python 29 1 Updated Sep 27, 2024

Translate Words or Sentences via Online Translators

R 45 6 Updated Aug 21, 2024

🚀 Level up your GitHub profile readme with customizable cards including LOC statistics!

Python 10,442 78 Updated Jun 3, 2024

A template for creating modular shiny applications that meet academic standards and are reproducible

R 16 4 Updated Sep 27, 2024

⏭️ Small coding tasks that enable you to participate in our development

33 3 Updated Nov 21, 2023

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Rust 136 6 Updated Sep 6, 2024

Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

R 90 6 Updated Jul 24, 2024

Creating composite plot using 'aplot'

R 8 4 Updated Jun 17, 2024

Online R learning for applied statistics

482 98 Updated Jul 11, 2024

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

R 445 101 Updated Aug 5, 2024

R package for performing 2-sample MR using MR-Base database

R 420 176 Updated Sep 26, 2024

An interactive explorer for single-cell transcriptomics data

JavaScript 622 116 Updated Sep 30, 2024

Visualising single-cell trajectories, including comparisons between two models 📈

R 30 5 Updated Dec 9, 2021

🧠 Visualizing Single Cell and Spatial Transcriptomics

R 40 11 Updated Sep 30, 2024

Functions to simplify and standardise antimicrobial resistance (AMR) data analysis and to work with microbial and antimicrobial properties by using evidence-based methods, as described in https://d…

R 83 12 Updated Oct 2, 2024
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