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GreenleafLab

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  1. ArchR ArchR Public

    ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

    R 365 129

  2. chromVAR chromVAR Public

    chromatin Variability Across Regions (of the genome!)

    R 145 36

  3. NucleoATAC NucleoATAC Public

    nucleosome calling using ATAC-seq

    Python 102 29

  4. 10x-scATAC-2019 10x-scATAC-2019 Public

    Publication Page for Satpathy*, Granja* et al 2019

    R 89 53

  5. MPAL-Single-Cell-2019 MPAL-Single-Cell-2019 Public

    Publication Page for MPAL Paper 2019

    R 75 36

  6. motifmatchr motifmatchr Public

    Fast motif matching in R

    C++ 39 10

Repositories

Showing 10 of 31 repositories
  • chromVAR Public

    chromatin Variability Across Regions (of the genome!)

    GreenleafLab/chromVAR’s past year of commit activity
    R 145 36 71 2 Updated Jul 10, 2024
  • ArchR Public

    ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

    GreenleafLab/ArchR’s past year of commit activity
    R 365 MIT 129 101 (2 issues need help) 16 Updated Jul 5, 2024
  • snakeATAC_singularity Public
    GreenleafLab/snakeATAC_singularity’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Jun 5, 2024
  • shareseq-pipeline Public
    GreenleafLab/shareseq-pipeline’s past year of commit activity
    Python 4 AGPL-3.0 2 0 0 Updated May 3, 2024
  • amplicon-smf Public

    Code for processing single-molecule footprinting data on synthetic amplicons (from Doughty*, Hinks*, Schaepe*, et al. 2024).

    GreenleafLab/amplicon-smf’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 23, 2024
  • motifmatchr Public

    Fast motif matching in R

    GreenleafLab/motifmatchr’s past year of commit activity
    C++ 39 GPL-3.0 10 7 1 Updated Jan 24, 2024
  • array_analysis Public

    Snakemake pipeline for Greenleaf lab array preprocessing.

    GreenleafLab/array_analysis’s past year of commit activity
    Python 1 0 0 0 Updated Jan 19, 2024
  • nnn_paper Public

    Analysis for "High-Throughput DNA melt measurements enable improved models of DNA folding thermodynamics".

    GreenleafLab/nnn_paper’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 19, 2024
  • scScalpChromatin Public
    GreenleafLab/scScalpChromatin’s past year of commit activity
    R 20 11 0 0 Updated Sep 22, 2023
  • ChrAccR Public

    Analyzing chromatin accessibility data in R

    GreenleafLab/ChrAccR’s past year of commit activity
    R 16 6 5 0 Updated Jun 23, 2023
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