Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.

This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.

Fitness landscapes for antibodies

This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture membrane protein orientation, stability, sequence, and structure. The methods are described in detail in the citations below.

AlphaFold-initiated replica exchange protein docking

Generative Language Modeling for Antibody Design

Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies

CArbohydrate-Protein Site IdentiFier