Code for running CFD simulation of larval zebrafish, and MATLAB code for pre/postprocessing. Accompanies the preprint "Behavioral adaptation to changing energy constraints via altered frequency of …

Code published with the paper Zhu S.I., McCullough M., Pujic J., Sibberas J., Sun, B. Darveniza T., Bucknall B., Avitan L., and Goodhill, G.J. "fmr1 mutation alters the early development of sensory…

Code for fitting the calcium imaging latent variable analysis model. Accompanies the paper "Model-based decoupling of evoked and spontaneous neural activity in calcium imaging data." by M. A. Tripl…

Code published with the paper Avitan L., Pujic J., Mölter J., McCullough M., Zhu S., Sun, B. Myhre, A.E., Goodhill, G.J. "Large Behavioral signatures of a developing neural code". Current Biology 2020

Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biology 16:143 (2018) doi: 10.1186/s12915-018-0606-4.