- Seattle, WA
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robencla Public
Transforms data into robust forms and trains an ensemble of XGboost classifiers.
R MIT License UpdatedOct 8, 2024 -
GBM Sex Specific Cluster Analysis
HTML MIT License UpdatedSep 20, 2024 -
valis Public
Forked from MathOnco/valisVirtual Alignment of pathoLogy Image Series
Python MIT License UpdatedAug 20, 2024 -
stan-zoo Public
A collection of common statistical tests implemented as Stan Bayesian regression models.
Jupyter Notebook MIT License UpdatedMar 11, 2024 -
daves_squidpy Public
Forked from scverse/squidpySpatial Single Cell Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 12, 2024 -
ecosystem-packages Public
Forked from scverse/ecosystem-packagesRegistry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 10, 2024 -
Ligand-Receptor-Pairs Public
Forked from LewisLabUCSD/Ligand-Receptor-PairsCompendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.
UpdatedDec 6, 2023 -
pyPairtreeOrchard Public
Grow your own pairtree orchard to produce robust fruit (i.e. make classifications).
Python MIT License UpdatedNov 27, 2023 -
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diffexpr Public
Forked from wckdouglas/diffexprPorting DESeq2 and DEXSeq into python via rpy2
Jupyter Notebook MIT License UpdatedAug 9, 2022 -
scPySingscore Public
Like singscore, but for single cell rna-seq. Made for scanpy anndata objects.
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bustools Public
Forked from BUStools/bustoolsTools for working with BUS files
C++ BSD 2-Clause "Simplified" License UpdatedAug 14, 2019 -
Immune-Subtype-Clustering Public
This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
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BrainDecon Public
Using Allen scRNA-seq to generate cell signatures, and using them to deconvolve bulk expression.
R UpdatedFeb 21, 2019 -
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scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 30, 2019 -
GeneSignalProc Public
Application of graph signal processing to gene expression data.
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CWL_scatter_example Public
An example of a 'scatter' and 'gather' using CWL, and the google cloud.
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CatterPlots Public
Did you ever wish you could make scatter plots with cat shaped points? Now you can!
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ConsensusClusterParallelPlus Public
Parallelized version of the bioconductor package ConsensusClusterPlus
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LabMeetingCalendar Public
Scripts used in generating the lab meeting schedule.
Python UpdatedFeb 13, 2018 -
examples-R Public
Forked from isb-cgc/examples-RAnalysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.
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GooglePipelinesRStan Public
This repository contains an example of using the google genomics pipeline to fit statistical models.
UpdatedNov 21, 2017 -
SymbolicEntropySystems Public
using symbolic entropy to compute transfer entropy