Index of lessons on elixir-europe-training

Flow cytometry data analysis with R

Nextflow AWS Parallel Cluster Configuration

Analyzing and visualizing KEGG information using the grammar of graphics

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

Command line tool for Wave containers provisioning service

Repository of the FAIR Biomedical Research Software (FAIR-BioRS) guidelines

A metadata commons to store research software metadata

Single cell trajectory detection

Aria is Your AI Research Assistant Powered by GPT Large Language Models

A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

Tandem repeat genotyping and visualization from PacBio HiFi data

Structural variant toolkit for VCFs

Fast and accurate de novo assembler for long reads

CRAN as Ubuntu Binaries

Download FASTQ files from SRA or ENA repositories.

Template for ELIXIR Lessons

pipeline for dog WGS alignment

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of m…

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

gpttools extends gptstudio for package development to help you document code, write tests, or even explain code

R package to print maps, draw on them, and scan them back in

Shiny Interactive Web Apps for Single-Cell Data

A simple gene co-expression analyses workflow powered by tidyverse and graph analyses

Software for hybridization capture bait design

Local filesystem registry for containers (intended for HPC) using Lmod or Environment Modules. Works for users and admins.

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)