Stars
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
HIPSTA - a python package for hippocampal shape and thickness analysis
Longitudinal Automatic Segmentation of Hippocampal Subfields (LASHiS) using multi-contrast MRI.
Python script & library to read hippocampal volumes computed by Freesurfer & ASHS
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
Package facilitating the tracking of sub-cortical U-Fibers
Structural Neuroimaging Analysis in Python
Small wrapper for running voxel-based morphometry (VBM) based on FreeSurfer segmentation
[MedIA 2023] "Superficial White Matter Analysis: An Efficient Point-cloud-based Deep Learning Framework with Supervised Contrastive Learning for Consistent Tractography Parcellation across Populati…
Generalized Diffusion MRI Denoising and Super-Resolution using Swin Transformers
Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.
List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
brainPlot is a MATLAB function to create simple line-art brain plots.
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables with support for NIFTI images. Complements the work in Ne…
Interactive visualization of volumetric-age trends for anatomical brain regions.
The PDFChat app allows you to chat with your PDF files in natural language.
A TractSeg pipeline compatible with PyDesigner outputs
Data and script for demonstrating the operation of the SIFT and SIFT2 algorithms on the phantom structure presented in: Zalesky et al., "A cautionary note on the use of SIFT in pathological connect…
Data, code and images clarifying the operation of the SIFT and SIFT2 methods on the examples presented in the publication: Zalesky et al. "SIFT in pathological connectomes: Follow-up response to Sm…
CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.
Harmonization of multi-shell diffusion MRI, an enhancement of https://github.com/pnlbwh/dMRIharmonization
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure