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Genetic and Molecular Epidemiology Laboratory

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  1. GraBLD GraBLD Public

    an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.

    R 10 4

  2. RV-EXCALIBER RV-EXCALIBER Public

    A methodological framework to conduct a calibrated gene-based rare variant association test by leveraging the genome aggregation database (gnomAD) as an external control dataset

    Shell 9

  3. AutoMitoC AutoMitoC Public

    Automatic Mitochondrial DNA Copy Number (mtDNA-CN) Pipeline to infer mtDNA-CN from SNP array intensities

    R 4 3

  4. RARity RARity Public

    A method to estimate rare variant heritability. Its versatility lies in the ability to estimate both gene-level and exome-wide heritability, in a fast, accurate, and unbiased manner.

    R 2

  5. MonsterLM MonsterLM Public

    A method to estimate the proportion of variance explained by heritability and gene-by-environment interactions, in a fast, accurate, efficient, and unbiased manner on biobank-scale datasets (N>300,…

    Shell 1

  6. lmutils lmutils Public

    Utilities for linear regression-based statistical computation, particularly in the same vein as methods like MonsterLM and RARity

    Rust 1

Repositories

Showing 7 of 7 repositories
  • lmutils Public

    Utilities for linear regression-based statistical computation, particularly in the same vein as methods like MonsterLM and RARity

    GMELab/lmutils’s past year of commit activity
    Rust 0 MIT 1 0 0 Updated Jul 23, 2024
  • lmutils.r Public

    Utilities for linear regression-based statistical computation, particularly in the same vein as methods like MonsterLM and RARity

    GMELab/lmutils.r’s past year of commit activity
    Rust 0 0 0 0 Updated Jul 23, 2024
  • MonsterLM Public

    A method to estimate the proportion of variance explained by heritability and gene-by-environment interactions, in a fast, accurate, efficient, and unbiased manner on biobank-scale datasets (N>300,000).

    GMELab/MonsterLM’s past year of commit activity
    Shell 1 GPL-3.0 0 2 0 Updated Apr 3, 2024
  • RARity Public

    A method to estimate rare variant heritability. Its versatility lies in the ability to estimate both gene-level and exome-wide heritability, in a fast, accurate, and unbiased manner.

    GMELab/RARity’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Dec 23, 2023
  • RV-EXCALIBER Public

    A methodological framework to conduct a calibrated gene-based rare variant association test by leveraging the genome aggregation database (gnomAD) as an external control dataset

    GMELab/RV-EXCALIBER’s past year of commit activity
    Shell 9 GPL-3.0 0 0 0 Updated Mar 4, 2023
  • AutoMitoC Public

    Automatic Mitochondrial DNA Copy Number (mtDNA-CN) Pipeline to infer mtDNA-CN from SNP array intensities

    GMELab/AutoMitoC’s past year of commit activity
    R 4 GPL-3.0 3 1 0 Updated Feb 14, 2022
  • GraBLD Public

    an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.

    GMELab/GraBLD’s past year of commit activity
    R 10 4 0 0 Updated Apr 9, 2019

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