Training deep neural networks with Keras

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

Illustrating CUDA C for general-purpose computing on GPUs

Python for Random Matrix Theory: cleaning schemes for noisy correlation matrices.

Pure Python/Numpy implementation of the Nelder-Mead algorithm.

Deep Learning for humans

A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

Add a progress meter to your loops in a second

Distributed Evolutionary Algorithms in Python

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index

Python for Single-cell Clustering Using Bifurcation Analysis

Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.

A scalable and concurrent programming implementation of Affinity Propagation clustering.

Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs and unrooted trees.

Python for Single-cell Clustering Using Bifurcation Analysis

A package for combining multiple partitions into a consolidated clustering. The combinatorial optimization problem of obtaining such a consensus clustering is reformulated in terms of approximation…

A Java package to automatically detect anomalies in large scale time-series data

Theano was a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It is being continued as PyTensor: www.github.…

An Open Source Machine Learning Framework for Everyone

Deep Scalable Sparse Tensor Network Engine (DSSTNE) is an Amazon developed library for building Deep Learning (DL) machine learning (ML) models

Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data