A bioinformatics pipeline to phase and impute genetic data

Fast and simple homebrew save manager for 3DS and Switch.

RFMIX - Local Ancestry and Admixture Inference Version 2

cython + htslib == fast VCF and BCF processing

Animation engine for explanatory math videos

A C++ platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

A Python platform to perform parallel computations of optimisation tasks (global and local) via the asynchronous generalized island model.

Segmented HAPlotype Estimation and Imputation Tool

efficient arrays of booleans for Python

Multi-GPU CUDA stress test

cuDF - GPU DataFrame Library

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Variational Inference of Polygenic Risk Scores

Pure-python implementation of UCSC liftOver genome coordinate conversion

liftover for python, made fast with cython

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

Applying polygenic scores (PGS) on imputed genotypes

Easy TOC creation for GitHub README.md

Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Script to convert GTC/BPM files to VCF

A small C and Python library for reading PLINK genotype files.

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is …

PLINK reader for Python.

LD Score Regression (LDSC)