• [Feature] avp classify will now add excluded queries to the Ingroup classification if the ai_features file is provided with -a [ai.out] (#25 ).

• [Feature] Added parameter number_hits_noingroup to define the max number of hits that are selected for a query when there is no ingroup hit (previously fixed at 50).

• [Bug Fix] Character ":" is not allowed in query ids (thanks @bheimbu).
• [Bug Fix] Query ids can be at most 255 characters long.

• [Bug Fix] Characters "|" and "@" in query ids were causing the program to hung. These are not allowed anymore.

• [Python] Updated the regular expressions to the new standards.

• [Blastdbcmd fix] The option -target_only caused occasionally the command to end prematurely and has been removed. Please update and rerun the analysis if you encountered this issue.

• [Bug fix] Calculate_ai.py will now ignore hits with no taxid (#8).

First public release of AvP