This repository contains two Python scripts for checking the format of prediction files for CAFA2 and CAFA3

For more information on CAFA see: http:https://biofunctionprediction.org Specifically, for the CAFA rules see: http:https://biofunctionprediction.org/node/8

Running

New for any prediction file:

./cafa_format_checker.py filename

This checks any type of prediction file.

For GO based predictions:

./cafa_go_format_checker.py filename

For Human Phenotype Ontology based predictions (HPO)

./cafa_hpo_format_checker.py filename

Where "filename" is the path to the prediction file

Authored by Iddo Friedberg. Distributed under GPLv3 license (attached)

Contact: [email protected]

Important: If you are participating in CAFA, you should subscribe to the afp-cafa mailing list: https://mailman.iastate.edu/mailman/listinfo/afpcafa