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Issues list

Parent process: Failed to build index
#682 by yangjw1996 was closed Jul 9, 2024 updated Jul 9, 2024
3
methylation extraction without the XR and XG tag
#278 by vivekbhr was closed Sep 13, 2019 updated Jul 3, 2024
14
Expected unique alignment %
#681 by gevro was closed Jul 1, 2024 updated Jul 1, 2024
2
Low unique alignment %
#676 by gevro was closed Jun 24, 2024 updated Jul 1, 2024
8
Low mapping efficiency
#317 by RubioB was closed Mar 3, 2020 updated Jun 25, 2024
31
How to extract methylation levels according to bam file
#678 by myoucchent was closed Jun 24, 2024 updated Jun 24, 2024
6
Correcting low % methylated regions
#679 by gevro was closed Jun 24, 2024 updated Jun 24, 2024
4
Analyzing spike in control performance
#677 by gevro was closed Jun 24, 2024 updated Jun 24, 2024
2
Confusion on how coverage is estimated
#675 by RJDan was closed Jun 21, 2024 updated Jun 21, 2024
4
bismark-methylation-extractor
#275 by kirkupc was closed Aug 19, 2019 updated Jun 18, 2024
19
Very low mapping efficiency
#674 by gevro was closed Jun 15, 2024 updated Jun 15, 2024
4
Execution Error
#671 by KayaHarper was closed Jun 11, 2024 updated Jun 11, 2024
9
Bismark Genome Preparation - "Parent process: Failed to build index"
#449 by VitaminBrad was closed Aug 15, 2021 updated May 27, 2024
4
Extremely slow bismark bisulfite mapping using bowtie2 and --score_min
#106 by sansense was closed Jul 13, 2017 updated May 13, 2024
17
Bismark PE/SE directional and non-directional alignments
#208 by digrigor was closed Oct 6, 2018 updated Apr 18, 2024
37
Bismark methylation extractor's bedGraph output returning ~50 million CpGs for WGBS?
#666 by JanmajaySingh was closed Apr 9, 2024 updated Apr 10, 2024
9
mbias plot methylation rate fluctuations
#664 by ertiaM was closed Mar 26, 2024 updated Mar 26, 2024
4
Generating cytosine report
#655 by desmodus1984 was closed Mar 5, 2024 updated Mar 19, 2024
15
Minimum conversion efficiency for filter_non_conversion
#663 by gevro was closed Mar 14, 2024 updated Mar 14, 2024
1
alignment problem with reference genome
#661 by Silvia-Giorgia-Signorini was closed Mar 13, 2024 updated Mar 13, 2024
5
Output of Bismark mapping is empty
#165 by Holly0123 was closed Apr 20, 2018 updated Mar 10, 2024
16
Can deduplicate_bismark (the component of bismark) script distinguish single-end/paired-end BAM/SAM Bismark files directly ?
#659 by changchuanjun was closed Mar 1, 2024 updated Mar 1, 2024
6
Is it necessary to execute command (samtools sort -n) before run Deduplication?
#658 by changchuanjun was closed Mar 1, 2024 updated Mar 1, 2024
2
bedgraph to bigwig
#371 by sanchari24 was closed Sep 30, 2020 updated Feb 26, 2024
15
Extremely low mapping efficiency using bowtie2 and reference genome with many scaffolds
#639 by LauraRt1 was closed Feb 23, 2024 updated Feb 23, 2024
11
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