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  1. BatchConvert BatchConvert Public

    A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, in a parallelised manner.

    Python 16 2

  2. ome_zarr_pyramid ome_zarr_pyramid Public

    Python 6

  3. OME_Zarr_Tools OME_Zarr_Tools Public

    Course materials for the practical on the Defragmentation Training School 2 - Porto, 8-12 May 2023

    Shell 3

  4. ZarrSeg ZarrSeg Public

    Command line tool to segment local and remote OME-Zarr data

    Python 2

  5. image_processing image_processing Public

    Forked from bugraoezdemir/image_processing

    A repo with several common tools for 3D image processing

    Python 2

  6. Rclone-BIA Rclone-BIA Public

    Scripts to facilitate exchange of data between local filesystems and BioImage Archive

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