🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

Predictor of TCR-epitope interactions

An Open Source Machine Learning Framework for Everyone

This repository contains implementations and illustrative code to accompany DeepMind publications

Open source code for AlphaFold.

Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology.

Integrative analysis pipeline for pooled CRISPR functional genetic screens

Experimental source code for MAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout)

Differential expression of RNA-seq data using the Negative Binomial

Transcript assembly and quantification for RNA-Seq

Graph-based alignment (Hierarchical Graph FM index)

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

SRA Tools