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Transgene integration and rearrangement discovery using NGS
A graph-based workflow manager for computational chemistry pipelines
Pan-genome methods used by MaizeGDB for the pan-gene tab
Python implementation of general linear model for quantifying fluorophores in fluorescent hyperspectral images
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Repositorio de apuntes y código del curso Introducción a la bioinformática e investigación reproducible para análisis genéticos del semestre 2017-II
🔬 Path to a free self-taught education in Bioinformatics!
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
Plant 3D (P3D): A plant phenotyping toolkit for 3D point clouds
PlantCV image analysis scripts used in the PlantCV v2.0 paper
An R Package for Managing Species Records from Biological Collections
A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse
🎄Visualization and annotation of phylogenetic trees
Examples how to use the babette R package
MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:
"Principles of Spatial Transcriptomics Analysis with Bioconductor" book
Interpretability methods to analyze the behavior and individual predictions of modern neural networks in R.
Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap
Workshop: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) ht…