Commits

Commits on Apr 11, 2022

Add important comment on canu
veghp
committedApr 11, 2022
Handle case when there is no assembly plan
veghp
committedApr 11, 2022

Commits on Apr 8, 2022

Add container labels
veghp
committedApr 8, 2022

Commits on Apr 7, 2022

Filter freebayes input
veghp
committedApr 7, 2022

Commits on Apr 5, 2022

Use nextflow pull
veghp
committedApr 5, 2022

Commits on Mar 31, 2022

Make minimap2 map-ont default parameter explicit
veghp
committedMar 31, 2022
Add details and corresponding script
veghp
committedMar 31, 2022
Update readme
veghp
committedMar 31, 2022
Add ci.yml to bumpversion
veghp
committedMar 31, 2022

Commits on Mar 2, 2022

Expose freebayes parameters to user
veghp
committedMar 2, 2022

Commits on Mar 1, 2022

Increase quality cutoff
veghp
committedMar 1, 2022
Add SGE config
veghp
committedMar 1, 2022
Bump version: 0.1.0 → 0.1.1
veghp
committedMar 1, 2022
Include config file in bumpversion config
veghp
committedMar 1, 2022
Set bumpversion commit and tag to True
veghp
committedMar 1, 2022
Add config
veghp
committedMar 1, 2022
Add version
veghp
committedMar 1, 2022
Reuse script instead of inline
veghp
committedMar 1, 2022
Reuse script instead of inline
veghp
committedMar 1, 2022

Commits on Feb 28, 2022

Use correct max length for NanoFilt
veghp
committedFeb 28, 2022
Move genbank conversion into its own script
veghp
committedFeb 28, 2022

Commits on Feb 26, 2022

Reuse review.py script in pipeline
veghp
committedFeb 26, 2022
Create separate params vars for de novo pipeline
veghp
committedFeb 26, 2022
Move script to its own file (review pipeline)
veghp
committedFeb 26, 2022

Commits on Feb 24, 2022

Move Python script to its own file
veghp
committedFeb 24, 2022
Publish only required alignment files
veghp
committedFeb 24, 2022
Move parameters to relevant workflow
veghp
committedFeb 24, 2022

Commits on Feb 22, 2022

Set up entrypoint for review pipeline
veghp
committedFeb 22, 2022
Update review pipeline to DSL2
veghp
committedFeb 22, 2022
Set up entrypoint for analysis pipeline
veghp
committedFeb 22, 2022
Update analysis pipeline to DSL2
veghp
committedFeb 22, 2022
Set up entrypoint
veghp
committedFeb 22, 2022
Implement DSL2 syntax for preview pipeline
veghp
committedFeb 22, 2022

Commits on Feb 18, 2022

Publish copy of files, not symlink
veghp
committedFeb 18, 2022

Commits on Feb 12, 2022

Fix trimmed fasta output path
veghp
committedFeb 12, 2022