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Tools compatible with the infrastructure of the European Variation Archive pipeline

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EBIvariation/eva-tools

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European Variation Archive (EVA) Tools Build Status

This repository contains tools compatible with the European Variation Archive infrastructure. Please checkout the ETL pipeline repository to load data these tools can consume, and the REST web services API repository to retrieve information conveniently.

The first tool currently included in this project is a VCF dumper, a web service which supports some of the queries from the core REST web services API and writes the output in VCF format, for later consumption by other applications.

The second tool allows to migrate MongoDB variation databases to the latest schema version, keeping track of which migrations were applied to each database.

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Tools compatible with the infrastructure of the European Variation Archive pipeline

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