Example Code

This is the repository for the BioImage Suite Web Project

Deployment infrastructure for the Image Data Resource

Free and Open Source, Distributed, RESTful Search Engine

a Python package for the specification, validation and manipulation of file formats and types

Kanban project management software

Focalboard is an open source, self-hosted alternative to Trello, Notion, and Asana.

Render transformed image tiles

Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.

Java implementation of the Zarr Specification

Rust implementation of the Zarr N-dimensional array format.

🍴 OpenNutriTracker is a free and open source calorie tracker with a focus on simplicity and privacy.

A Repository of Notebooks, Revision notes and Presentation tools for the Explainable AI in Biology Conference in October 2024.

Code, notebooks, and images for the "Exploring PyTorch and Transformers for Genomic Sequence Classification" workshop.

Web page for validating OME-NGFF files

Scripts for use with BIOMERO

BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

Voici turns any Jupyter Notebook into a static web application

Crick Advanced Light Microscopy

Single molecules in a virtual cell

Script to import images from fileserver mounted on an OMERO server

A password generator compiled as Wasm for use on the CLI, in a custom element, or as a module.