Draw UpSet plots with Matplotlib

Repository for storing prototype functionality implementations for the BKP

Allen Institute Taxonomy building R package

improved clustering pipeline for transcriptomic data

Pilot for single cell benchmarking datasets

T-Distributed Stochastic Neighbor Embedding Library

Parallel t-SNE implementation with Python and Torch wrappers.

Blazing fast toolkit to work with .hic and .cool files

BICAN data models

Oxford Nanopore's Basecaller

Python package to perform enrichment analysis from omics data.

The tools for your .cool's

Visualization and analysis software for Hi-C data -

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

WDL Analysis Research Pipelines

A collection of tools for Hi-C data analysis

Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition

SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Notes on single-cell Hi-C technologies, tools, and data

Create cisTarget databases

Systematically learn and evaluate manifolds from high-dimensional data

REMORA: REsource MOnitoring for Remote Applications