Inference ONNX #367
Merged
Inference ONNX #367
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Bumps [ipython](https://github.com/ipython/ipython) from 7.31.1 to 8.10.0. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](ipython/ipython@7.31.1...8.10.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]>
…thon-8.10.0 Bump ipython from 7.31.1 to 8.10.0 in /docs
Add instructions for Google colab
Added urllib3
Added new build, due to conflicts with urllib3 recent updates.
Modified file
added build
Update version
Updated Ubuntu OS
Changed ubuntu version to 22.04
Changed Ubuntu version
Update GitHub Actions workflow to use mamba for dependency management
Excluding python=3.9 to resolve the following issue is github action runs: Could not solve for environment specs The following packages are incompatible ├─ python 3.8 is requested and can be installed; └─ python 3.9** is uninstallable because it conflicts with any installable versions previously reported.
Added python 3.9 to test the environment
Excluding python 3.8 as requirement
Update _version.py
Excluded python version as dependency
Updated skimage version for importing the graph module
Added JPype1
Separately executed test cases for tilestitching functionality and other PathML modules.
Added tilestitching code
Dev tilestitching
Dev tilestitching
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Adding
inferencesubpackage.This subpackage will enable inference via ONNX models.
Tests are in the
inference_testsfolder.A dummy ONNX CNN is in
tests/testdatafor the tests.Updates to dependencies:
numpy==1.22.4 # orig = 1.19.5
pytest==7.4.0 # orig = 6.2.5
deepcell==0.12.7 # orig = 0.11.0
pandas==1.5.2 # orig no req
Includes changes to the readthedocs requirement file and how miniconda is installed. Detailed here #369