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Parameterize dtype for h5path with SlideData constructor #335

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Parameterize dtype for h5path with SlideData constructor #335

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cab0409
Store masks as bools
tddough98 Oct 4, 2022
6e6f802
Use dtype from SlideData constructor
tddough98 Oct 4, 2022
6dbf069
Merge branch 'merge-master' into change-dtypes
tddough98 Oct 14, 2022
be5ed26
Update h5path documentation
tddough98 Oct 14, 2022
8c78593
Revert making all masks boolean
tddough98 Oct 20, 2022
8dfafde
Merge branch 'merge-master' into change-dtypes
tddough98 Oct 25, 2022
08d8327
Merge branch 'merge-master' into change-dtypes
tddough98 Oct 25, 2022
5353ac2
Fix parentheses
tddough98 Oct 25, 2022
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Merge branch 'merge-master' into change-dtypes
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@tddough98
tddough98 committed Oct 25, 2022
commit 8dfafdef3265002249417ce6e98f5bd1d56b1f1c
4 changes: 2 additions & 2 deletions pathml/core/h5managers.py
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Original file line number Diff line number Diff line change
Expand Up @@ -50,10 +50,10 @@ def __init__(self, h5path=None, slidedata=None):
str(self.countspath.name) + "/tmpfile.h5ad"
)
# Default to float16 if there are no tiles
self.dtype = get_tiles_dtype(h5path) or np.dtype('float16')
self.dtype = get_tiles_dtype(h5path) or np.dtype("float16")

else:
assert slidedata, f"must pass slidedata object to create h5path"
assert slidedata, "must pass slidedata object to create h5path"
self.dtype = slidedata.dtype
# initialize h5path file hierarchy
# fields
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