Add class MultiparametricSlide to preprocessing/wsi.py #3
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| @@ -397,7 +397,7 @@ | |||
| "name": "python", | |||
| "nbconvert_exporter": "python", | |||
| "pygments_lexer": "ipython3", | |||
| "version": "3.7.7" | |||
| "version": "3.8.5" | |||
| } | |||
| }, | |||
| "nbformat": 4, | |||
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We should probably find a way to automatically exclude jupyter notebook metadata from commits/diffs...
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I'll fix that before merging
|
We need to also add this new class to the docs |
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Added support for multiparametric images of all proprietary formats with class MultiparametricSlide.
Depends on python-bioformats which uses javabridge to access java bioformats library. Bioformats is maintained by OME and used in multiple large projects (ImageJ, CellProfiler, etc.)
Installation of new dependencies is not required. User is prompted to install dependencies when they call MultiparametricSlide.
Added and passed tests in test_wsi.py.