Analyse globale de génomes procaryotes par distribution de mots

Damien Legros, Cédric Cornède et Valentin Gherdol

Dans ce projet, nous nous sommes intéressés à l'analyse de K-mères au sein des génomes de bactéries et d'archées.

Bibliographie utilisée :

• Sims G. E., Jun S. R., Wu G. A. and Kim S. H. (2009). Alignment -free genome comparison with feature frequency profiles (FFP) and optimal resolutions. Proc Natl Acad Sci U S A 106, 2677-2682.
• Deschavanne P., DuBow M. S. and Regeard C. (2010). The use of genomic signature distance between bacteriophages and their hosts displays evolutionary relationships and phage growth cycle determination. Virol J 7, 163.
• Deschavanne P. and Tuffery P. (2008). Exploring an alignment free approach for protein classification and structural class prediction. Biochimie 90, 615-625.
• Chapus C., Dufraigne C., Edwards S., Giron A., Fertil B. and Deschavanne P. (2005). Exploration of phylogenetic data using a global sequence analysis method. BMC Evol Biol 5, 63.
• Deschavanne P. J., Giron A., Vilain J., Fagot G. and Fertil B. (1999). Genomic signature: characterization and classification of species assessed by c haos game representation of sequences. Mol Biol Evol 16, 1391-1399.