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Starred repositories
A modular graph-based Retrieval-Augmented Generation (RAG) system
Integrated Machine Learning for Multi-omics Classification and Prediction
Scripts for fine-tuning Meta Llama with composable FSDP & PEFT methods to cover single/multi-node GPUs. Supports default & custom datasets for applications such as summarization and Q&A. Supporting…
Code used to test rare and ultra-rare variants for association with an in-silico score for CAD.
Provides mode of inheritance prediction for all possible missense variants in the human genome.
🦜🔗 Build context-aware reasoning applications
A Knowledge Graph for Relational Learning On Biological Data
Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)
A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge…
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.
StableLM: Stability AI Language Models
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
A pure JavaScript medical research image viewer.
Design and implementation of FAIR Data Cube
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers
A Pilot Project for Read Counts, Novel Transcripts and Population Level Functions in Metatranscriptomes
Viral VDAP: a viral alignment, variant discovery, and annotation pipeline launched at the NCBI-Hackathon 2019