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This Python package provides a comprehensive set of tools and advanced algorithms for analyzing 3D motion capture data. It is specifically designed to process gait data stored in c3d format. Prior to utilizing the features of gaitalytics, it is necessary to perform data labeling, modeling, and filtering procedures.

The library's versatility allows it to be adaptable to various marker sets and modeling algorithms, offering high configurability.

Current pre-release is only tested with data acquired with Motek Caren, HBM2 Lower Body Trunk and PIG.

Free software: MIT license

[1] Michael D. Lewek et al. (2012), “The influence of mechanically and physiologically imposed stiff-knee gait patterns on the energy cost of walking”, vol. 93, no.1, pp. 123-128. Publisher: Archives of Physical Medicine and Rehabilitation.

[2] A. Gouelle and F. Mégrot (2017), “Interpreting spatiotemporal parameters, symmetry, and variability in clinical gait analysis”, Handbook of Human Motion pp. 1-20, Publisher: Springer International Publishing.

Please be aware of the dependency of gaitalytics to Biomechanical-ToolKit (BTK). To install follow the instructions here or use conda-forge version here

Fast install with anaconda:

pip install gaitalytics
conda install -c conda-forge btk

You can also install the in-development version with:

pip install https://github.com/DART-Lab-LLUI/python-gaitalytics/archive/main.zip
conda install -c conda-forge btk

Gaitalytics can be used with any marker set, which at least includes four hip markers (left front/back, right front/back) and four foot markers (left heel/toe, right heel/toe) and four ankle makers (left medial/lateral, right medial lateral).

All functionalities in the libraries only take points into account which are configured in as specific yaml file. Working example file can be found here

Minimal requirements would look like this:

marker_set_mapping:
  left_back_hip: LASIS
  right_back_hip: RASIS
  left_front_hip: LPSIS
  right_front_hip: RPSIS

  left_lat_malleoli: LLM
  right_lat_malleoli: RLM
  left_med_malleoli: LMM
  right_med_malleoli: RMM

  right_heel: RHEE
  left_heel: LHEE
  right_meta_2: RMT2
  left_meta_2: LMT2

  com: COM
  left_cmos: cmos_left
  right_cmos: cmos_right

model_mapping:

Warning Do not rename keys of the minimal setting

Please take the resources in the example folder for advice.

https://python-gaitalytics.readthedocs.org

To run all the tests run:

tox

Note, to combine the coverage data from all the tox environments run:

set PYTEST_ADDOPTS=--cov-append
tox

PYTEST_ADDOPTS=--cov-append tox

https://github.com/ionelmc/cookiecutter-pylibrary