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Rb ips #1

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jddamore
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DO NOT MERGE.
This is just to do a compare of the files changed for another PR being opened on fhir-jpaserver-starter

tadgh and others added 30 commits August 3, 2022 10:55
* Bump for CVE

* Bump spring-data version

* Fix compile

* Cut over to spring bom
…esponse (hapifhir#3882)

* Finish up changelog, minor refactor

* reset buffer only

* Hack for some replacements

* Failure handling

* wip
* Fixed the issue

* Changelog modification

* Changelog modification
hapifhir#3709)

* Implemented seventh character extended code and the corresponding display

* Modifications

* Changes on previous test according to modifications made in ICD10-CM XML file
* updated pointcuts to work as intended

* added changelog

* review fixes

Co-authored-by: leif stawnyczy <[email protected]>
…e left orphaned (hapifhir#3905)

* Add test and implementation

* Add changelog
* Add implementation, changelog, test

* Update hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java

Co-authored-by: Ken Stevens <[email protected]>

Co-authored-by: Ken Stevens <[email protected]>
* Applying all changes from previous dev branch to current one pointing to rel_6_1

* Fixing merge conflict related to Msg.code value.

* Fixing Msg.code value.

* Making checkstyle happy.

* Making sure that all tests are passing.

* Passing all tests after fixing Msg.code

* Passing all tests.

Co-authored-by: peartree <[email protected]>
hapifhir#3746)

* 3745 - fixed NPE for bundle with duplicate conditional create resources and a conditional delete

* created unit test for skip of delete operation while processing duplicating create entries

* moved unit test to FhirSystemDaoR4Test
* added MdmLinkCreateSvcimplTest

* fixed creating mdm-link not setting the resource type correctly

* fixed a bug where ResourcePersistenceId was being duplicated instead of passed on

* Update hapi-fhir-jpaserver-mdm/src/test/java/ca/uhn/fhir/jpa/mdm/svc/MdmLinkCreateSvcImplTest.java

Change order of tests such that assertEquals takes expected value then actual value

Co-authored-by: jdar8 <[email protected]>

* added changelog, also changed a setup function in test to beforeeach

Co-authored-by: Long Ma <[email protected]>
Co-authored-by: jdar8 <[email protected]>
* Fix to the issue

* Progress

* fixed the issue

* Addressing suggestions

* add response status code to MethodOutcome

* Addressing suggestions

Co-authored-by: Ken Stevens <[email protected]>
…hir#3912)

* Respect caching in bullk export, fix bug with completed date on empty jobs

* add changelog

* Add impl

* Add breaking test

* Complete failing test

* more broken tests

* Fix more tests'

* Fix paging bug

* Fix another brittle test
* do not attempt to merge compartment permissions with filters

* changelog

* Rename to IT for concurrency problems

Co-authored-by: Tadgh <[email protected]>
* begin with failing test

* fixed

* change log

* rollback default count change and corresponding comments

Co-authored-by: Ken Stevens <[email protected]>
* lower batchsize of delete requests so that we do not get sql exceptions

* blah

* fix test

* updated tests to not fail

Co-authored-by: leif stawnyczy <[email protected]>
riobennin and others added 30 commits September 17, 2022 04:50
…erance and Condition, add logic for MedicationAdministration and MedicationDispense (for the future), add stubs for DocumentReference (no filtering now).
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