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This folder contains all the data and code used in the manuscript entitled __"Transcriptomic clustering of critically ill COVID-19 patients"__ (https://www.medrxiv.org/content/10.1101/2022.03.01.22271576v1):
- "COVID_clustering_final.R": R code. This file uploads all the following data files, that must be in the same directory.
- "COVID_clustering.R": R code. This file uploads all the following data files, that must be in the same directory.
- "transcript_data.Rdata": Transcriptomic data. FastQ files available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197204.