Tags: Crazy-Rookie/DFTK.jl
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[Diff since v0.5.3](JuliaMolSim/DFTK.jl@v0.5.3...v0.5.4) **Closed issues:** - How to set up models (JuliaMolSim#666) - Stronger type annotations for model construction (JuliaMolSim#668) - Get rid of lowpass_for_symmetry! (JuliaMolSim#672) - Don't hardcode ylims in band structure (JuliaMolSim#674) - MPI error with redirect_stdout() (JuliaMolSim#681) **Merged pull requests:** - Handling complex numbers for PairwisePotential (JuliaMolSim#655) (@epolack) - Add more type annotations to model constructors (JuliaMolSim#670) (@mfherbst) - Performance optimizations (JuliaMolSim#671) (@antoine-levitt) - Handling of extra bands in response calculations (JuliaMolSim#679) (@gkemlin) - Store G_vectors and r_vectors in the basis (JuliaMolSim#680) (@antoine-levitt)
[Diff since v0.5.2](JuliaMolSim/DFTK.jl@v0.5.2...v0.5.3) **Closed issues:** - Rewrite ewald (JuliaMolSim#656) - DFTK doesn't precompile (JuliaMolSim#660) **Merged pull requests:** - Precompute Ewald summation bounds (JuliaMolSim#659) (@niklasschmitz) - Small changes to improve working with intervals (JuliaMolSim#661) (@mfherbst) - Testing RealSpaceMultiplication consistency as well (JuliaMolSim#662) (@epolack) - Refactor Pairwise term to precompute summation bounds (JuliaMolSim#663) (@niklasschmitz) - fix typo (JuliaMolSim#664) (@killah-t-cell) - Fix performance gotcha (JuliaMolSim#665) (@antoine-levitt) - Turn LOBPCG problem size warning to error (JuliaMolSim#667) (@antoine-levitt)
[Diff since v0.5.1](JuliaMolSim/DFTK.jl@v0.5.1...v0.5.2) **Closed issues:** - Fix forwarddiff with symmetries (JuliaMolSim#643) - Tolerance issue when using ForwardDiff (JuliaMolSim#651) **Merged pull requests:** - Forwarddiff for metals (JuliaMolSim#638) (@mfherbst) - Fix cart (JuliaMolSim#657) (@epolack) - Forward-diff support for pseudo parameters (JuliaMolSim#658) (@mfherbst)
[Diff since v0.5.0](JuliaMolSim/DFTK.jl@v0.5.0...v0.5.1) **Closed issues:** - Pretty traces (JuliaMolSim#123) - Define and use cis2pi (JuliaMolSim#400) - Direct minimization with Double64 does not work (JuliaMolSim#428) - Investigate forces test failure (JuliaMolSim#625) - Help Needed (JuliaMolSim#649) **Merged pull requests:** - Remove dead and unused code (JuliaMolSim#634) (@mfherbst) - Remove deprecation wrappers (JuliaMolSim#635) (@mfherbst) - Zygote scf (JuliaMolSim#636) (@mtowara) - Use chemical_formula function from AtomsBase (JuliaMolSim#639) (@mfherbst) - Simplify pwbasis constructors (JuliaMolSim#640) (@antoine-levitt) - Add and use cis2pi functions (JuliaMolSim#641) (@kvnoct) - Filter rgrid symmetries (JuliaMolSim#642) (@antoine-levitt) - Zygote scf (JuliaMolSim#644) (@mtowara) - Integrate with InteratomicPotentials.jl (JuliaMolSim#645) (@jrdegreeff) - CompatHelper: bump compat for Roots to 2, (keep existing compat) (JuliaMolSim#646) (@github-actions[bot]) - Test consistency of local potential in both real and Fourier space (JuliaMolSim#647) (@antoine-levitt) - Using Cartesian routine (JuliaMolSim#648) (@epolack) - update support for InteratomicPotentials v0.2 (JuliaMolSim#654) (@jrdegreeff)
[Diff since v0.4.7](JuliaMolSim/DFTK.jl@v0.4.7...v0.5.0) Note that this release increases the minor version and contains a number of breaking changes: - The `atoms` field in the `Model` data structure, which used to contain pairs mapping from an element to a list of associated positions, is now split up into a plain `atoms` vector (containing a flat and repeated list of all elements) and a `positions` vector (containing the list of respective positions). I.e. whereas before one would have, for example: ```julia Ga = ElementCoulomb(:Ga) As = ElementCoulomb(:As) atoms = [Ga => [[0.1, 0.2, 0.3], [0.4, 0.5, 0.6], ], As => [[0.7, 0.8, 0.9], ], ] ``` we now have ```julia Ga = ElementCoulomb(:Ga) As = ElementCoulomb(:As) atoms = [Ga, Ga, As] positions = [[0.1, 0.2, 0.3], [0.4, 0.5, 0.6], [0.7, 0.8, 0.9], ] ``` This change is carried forward to **all interfaces** of DFTK. This means that all `Model` constructors as well as the `model_atomic`, `model_DFT`, `model_LDA`, `model_PBE`, `model_SCAN` functions change interface. E.g. constructing an LDA model for this fictitious gallium arsenide system could now be done as such: ```julia Ga = ElementCoulomb(:Ga) As = ElementCoulomb(:As) atoms = [Ga, Ga, As] positions = [[0.1, 0.2, 0.3], [0.4, 0.5, 0.6], [0.7, 0.8, 0.9], ] lattice = 5.6 * I(3) model = model_LDA(lattice, atoms, positions) ``` All examples and tests have been updated and can be used to draw examples for the new interface. For convenience and to simplify amending downstream code the old `model_LDA` etc. function have not been completely removed for now, but only marked as deprecated. However, removal will occur at the next patch release. (JuliaMolSim#626) - The `compute_forces` and `compute_forces_cart` functions now also return arrays of `Vec3` (Static vector of 3 dimensions). These vectors are the forces on a particular atom in the same order as the `model.positions` and `model.atoms` arrays. (JuliaMolSim#626) - The `Model(lattice; atoms, positions, kwargs...)` constructor has been dropped in favour of `Model(lattice, atoms, positions; kwargs...)`, i.e. `atoms` and `positions` are now positional arguments. This was done to make the constructor resemble more the structure of the `model_LDA`, `model_PBE`, etc. functions. (JuliaMolSim#629). - The default LDA model constructed by `model_LDA` is now `[:lda_x, :lda_c_pw]` instead of `[:lda_xc_teter93]`. To return to the old behaviour replace `model_LDA(lattice, atoms, positions; kwargs...)` by `model_DFT(lattice, atoms, positions, :lda_xc_teter93; kwargs...)`. (JuliaMolSim#629) - The default `kshift` in the `PlaneWaveBasis` constructor is now always `(0, 0, 0)`. It used to be `1/2` in one direction in case the `kgrid` was even in this direction. Manually specifying the desired `kshift` returns the old behaviour. (JuliaMolSim#630) - The `load_psp(element; kwargs...)` function is discontinued and has been removed. Instead use a combination of `list_psp(element; kwargs...)` with `load_psp(identifier)` or the `attach_psp(system::AbstractSystem)` function. (JuliaMolSim#558) - The deprecated `compute_stresses(scfres)` function has now been removed in favour of `compute_stresses_cart(scfres)`. (JuliaMolSim#628) - The deprecated `PowerNonlinearity(C, α)` constructor has now been removed in favour of `LocalNonlinearity(ρ -> C * ρ^α)`. (JuliaMolSim#628) **Closed issues:** - Autodiff (JuliaMolSim#107) - Figure out notations for the symmetry operations (JuliaMolSim#266) - Possibility to "unfold" the k grid (JuliaMolSim#382) - Make another round of profiling (JuliaMolSim#425) - Improve density computation (JuliaMolSim#456) - Employing DFTK results for Machine-Learning (JuliaMolSim#595) - Refactor SymOp to be primarily (W,w) rather than (S,tau) (JuliaMolSim#618) - Remove ksymops (JuliaMolSim#621) **Merged pull requests:** - Integrate with AtomsBase (JuliaMolSim#558) (@mfherbst) - Adding framework for pairwise interactions (JuliaMolSim#602) (@epolack) - Random optimization (JuliaMolSim#610) (@antoine-levitt) - Fix performance issue in block array (JuliaMolSim#611) (@antoine-levitt) - Small cleanup in LOBPCG (JuliaMolSim#612) (@mfherbst) - Remove coordinate_cart field from Kpoint (JuliaMolSim#613) (@niklasschmitz) - Small optimizations (JuliaMolSim#615) (@antoine-levitt) - Refactoring diagonalize_all_kblocks (JuliaMolSim#617) (@antoine-levitt) - Symop refactoring (again!) (JuliaMolSim#619) (@antoine-levitt) - Fixes for julia 1.8 (JuliaMolSim#620) (@mfherbst) - Excise ksymops (JuliaMolSim#622) (@antoine-levitt) - Excise symops, part 2 (JuliaMolSim#624) (@antoine-levitt) - Refactor atoms field in Model (JuliaMolSim#626) (@mfherbst) - Remove deprecated features (JuliaMolSim#628) (@mfherbst) - Make atoms and positions positional arguments of the Model (JuliaMolSim#629) (@mfherbst) - Change default kshift to zero (JuliaMolSim#630) (@mfherbst) - Remove kpoint fallback (JuliaMolSim#631) (@mfherbst) - Remove final mention of ksymops (JuliaMolSim#632) (@mfherbst)
[Diff since v0.4.6](JuliaMolSim/DFTK.jl@v0.4.6...v0.4.7) **Closed issues:** - Segfault in preconditioning (JuliaMolSim#529) - Investigate eigensolver bad convergence (JuliaMolSim#578) - Convergence monitoring (JuliaMolSim#579) - De-`threadid`ing parallel loops (JuliaMolSim#588) **Merged pull requests:** - CompatHelper: bump compat for Polynomials to 3, (keep existing compat) (JuliaMolSim#598) (@github-actions[bot]) - Use Val(true) in G_to_r to help const-prop (JuliaMolSim#605) (@antoine-levitt) - Change printing (JuliaMolSim#606) (@antoine-levitt) - Switch maximum iteration count to 100 (JuliaMolSim#607) (@antoine-levitt) - Fix unsafe use of unpack (JuliaMolSim#608) (@antoine-levitt)
[Diff since v0.4.5](JuliaMolSim/DFTK.jl@v0.4.5...v0.4.6) **Closed issues:** - Use symmetrization for forces (JuliaMolSim#515) **Merged pull requests:** - Replace `@timing_seq` by thread-local timers (JuliaMolSim#574) (@mfherbst) - Optimization to density building (JuliaMolSim#575) (@antoine-levitt) - Cleanup Chi0Mixing docstrings and timings (JuliaMolSim#576) (@mfherbst) - Symop refactoring (JuliaMolSim#577) (@antoine-levitt) - Fix type in periodic problems guide (JuliaMolSim#580) (@epolack) - AtomicNonlocal Zygote compatibility (JuliaMolSim#581) (@mtowara) - Show function for kpoints (JuliaMolSim#582) (@antoine-levitt) - Proper integration of SCF with ForwardDiff (JuliaMolSim#583) (@mfherbst) - Schur complement in Sternheimer solver (JuliaMolSim#584) (@gkemlin) - Selection from zoo of PBE functionals (JuliaMolSim#586) (@mfherbst) - Use symmetrization in density construction (JuliaMolSim#589) (@antoine-levitt) - Remove a forwarddiff workaround (JuliaMolSim#590) (@antoine-levitt) - Fix threading (JuliaMolSim#592) (@antoine-levitt) - Fix formula to match comment (JuliaMolSim#594) (@epolack) - Symmetrize forces (JuliaMolSim#596) (@antoine-levitt) - Simplify the erfc cutoff in ewald (JuliaMolSim#597) (@antoine-levitt) - Support for multiple partials in ForwardDiff SCF (JuliaMolSim#599) (@niklasschmitz) - Using pseudo-inverse for one- and two-dimensional cells (JuliaMolSim#601) (@epolack) - Fix stress symmetrization (JuliaMolSim#603) (@antoine-levitt) - Add explicit error if SCF is used with no kinetic term (JuliaMolSim#604) (@epolack)
[Diff since v0.4.4](JuliaMolSim/DFTK.jl@v0.4.4...v0.4.5) **Closed issues:** - Make perturbation-based error bounds available in master (JuliaMolSim#560) **Merged pull requests:** - Merge the two functions for standardising cells (JuliaMolSim#568) (@mfherbst) - More XC fallback implementations (JuliaMolSim#569) (@mfherbst) - Recode lda_c_vwn (JuliaMolSim#570) (@antoine-levitt) - Implement meta-GGA functionals (JuliaMolSim#571) (@mfherbst) - Implement meta-GGAs depending on the laplacian of the density (JuliaMolSim#572) (@mfherbst) - Remove outdated and broken ABINIT interface (JuliaMolSim#573) (@mfherbst)
[Diff since v0.4.3](JuliaMolSim/DFTK.jl@v0.4.3...v0.4.4) **Closed issues:** - Error showing basis without kshift (JuliaMolSim#554) **Merged pull requests:** - Turn generators into arrays (JuliaMolSim#556) (@antoine-levitt) - Implement Marzari-Vanderbilt-DeVita-Payne (cold) smearing (JuliaMolSim#557) (@azadoks) - Fix typo (JuliaMolSim#559) (@haampie) - new example using AD to compute error bounds for forces (JuliaMolSim#561) (@gkemlin) - [WIP] Zygote SCF (JuliaMolSim#563) (@niklasschmitz) - Generalize PowerNonlinearity to LocalNonlinearity (JuliaMolSim#564) (@antoine-levitt) - Simplify xc fallbacks, allow second derivatives, remove codegen (JuliaMolSim#565) (@antoine-levitt) - Reformulate readme (JuliaMolSim#566) (@mfherbst)
[Diff since v0.4.2](JuliaMolSim/DFTK.jl@v0.4.2...v0.4.3) **Merged pull requests:** - Update to Wannier example and rename `atomic_symbol` (JuliaMolSim#550) (@mfherbst) - Refactor ene_ops and Terms interface (JuliaMolSim#551) (@mfherbst) - Remove model backreference from `Kpoint` structure (JuliaMolSim#552) (@mfherbst) - Include advertisement to DFTK school 2022 (JuliaMolSim#553) (@mfherbst)
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