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@Clinical-Genomics

Clinical Genomics

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  1. scout scout Public

    VCF visualization interface

    HTML 148 45

  2. BALSAMIC BALSAMIC Public

    Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

    Python 44 17

  3. raredisease raredisease Public

    Forked from nf-core/raredisease

    CG's rare disease pipeline in next flow, see the main repo here 👇

    Nextflow 5 1

  4. MIP MIP Public

    Mutation Identification Pipeline. Read the latest documentation:

    Perl 42 10

  5. microSALT microSALT Public

    Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

    Python 2 3

  6. MUTANT MUTANT Public

    Microbial Utility Toolbox And wrapper for data traNsmission and Transformation

    Python 1

Repositories

Showing 10 of 105 repositories
  • cg Public

    Glue between Clinical Genomics apps

    Clinical-Genomics/cg’s past year of commit activity
  • scout Public

    VCF visualization interface

    Clinical-Genomics/scout’s past year of commit activity
    HTML 148 BSD-3-Clause 45 168 (5 issues need help) 3 Updated Aug 26, 2024
  • microSALT Public

    Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

    Clinical-Genomics/microSALT’s past year of commit activity
    Python 2 GPL-3.0 3 15 2 Updated Aug 26, 2024
  • BALSAMIC Public

    Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

    Clinical-Genomics/BALSAMIC’s past year of commit activity
    Python 44 MIT 17 94 13 Updated Aug 26, 2024
  • reference-files Public

    Small reference files

    Clinical-Genomics/reference-files’s past year of commit activity
    Lua 4 2 1 1 Updated Aug 26, 2024
  • chanjo2 Public

    Persistent coverage analysis tool using the d4 format

    Clinical-Genomics/chanjo2’s past year of commit activity
    Python 2 0 16 3 Updated Aug 26, 2024
  • trailblazer Public

    Keep track of and manage analyses

    Clinical-Genomics/trailblazer’s past year of commit activity
    Python 5 MIT 2 12 4 Updated Aug 26, 2024
  • hermes Public

    Communication layer between CG and the pipelines.

    Clinical-Genomics/hermes’s past year of commit activity
    Python 1 0 5 3 Updated Aug 26, 2024
  • crunchy Public

    Compress fastq files with spring and check the integrity

    Clinical-Genomics/crunchy’s past year of commit activity
    Python 1 MIT 1 2 3 Updated Aug 25, 2024
  • meatballs Public

    An open source recipe book from the awesome staff of Clinical Genomics

    Clinical-Genomics/meatballs’s past year of commit activity
    Python 2 MIT 1 3 26 Updated Aug 23, 2024

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