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Ci-TJ
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Lists (31)
Community
Community, group and Orgnization.9 repositories
Computational Biology
7 repositories
CRAN
218 repositories
CV
9 repositories
Data Science
137 repositories
Evolution
29 repositories
Feature Engineering
Feature Engineering, data preprocessing, embedding and clustering.63 repositories
Gene Ontology
27 repositories
Generalization
Model generalization, out-of-distribution, domain adaption, domain generalization111 repositories
Genome
25 repositories
Graph
Just for math!11 repositories
Interactome
Algorithms and tools for molecular interactions57 repositories
Loss_optimizer
Loss function, optimizer, model training tricks and model metrics and so on.39 repositories
Math
13 repositories
ML
Machine learning ensembles from CS!96 repositories
multimodal
multimodal NN framework10 repositories
Network
Tools for biological network!95 repositories
NGS
113 repositories
NLP
109 repositories
Proteomics
27 repositories
Resources
2 repositories
scRNA-seq
188 repositories
Sequence Analysis
Algorithms for analyzing the biological sequences, such as alignment, statistics and so on.31 repositories
SSL
positive-unlabeled learning, semi-supervised learning, self-supervised learning37 repositories
Statistics Bin
Trash bin for statistical repo.12 repositories
Structurome
40 repositories
TMP
Temporary!21 repositories
Tool
Tools and ML models for bioinformatics!88 repositories
Transcriptome
22 repositories
Translatome
6 repositories
Visualization
Interactive web-based approach, visulization, plot.8 repositories
Starred repositories
Implementation of the proposed Adam-atan2 from Google Deepmind in Pytorch
High-quality implementations of standard and SOTA methods on a variety of tasks.
A PyTorch class that implements an approximate Gaussian process as the last layer of a neural network
TUnA: Transformer-based Uncertainty Aware model for PPI Prediction
Chromatin Modules across cell types.The code
Contextualizing protein representations using deep learning on protein networks and single-cell data
Implementation of Autoregressive Diffusion in Pytorch
omics data analysis using clusterProfiler ;)
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.
HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
Approximate nearest neighbour search for microbial genomes based on hash metric
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative model.
Testing Simultaneous Diagonalizability
Conditional independence testing with e-values
Software to accompany P. Fryzlewicz (2020) "Narrowest Significance Pursuit: inference for multiple change-points in linear models".