Pipeline to fetch metadata and raw FastQ files from public databases

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

Courses & workshops led by members of the Krishnan Lab.

A Python toolkit for setting up benchmarking dataset using biomedical networks

A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

NetworkX-based Python library for representing ontologies