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ChariteExpMri · Feb 29, 2024 · 117e835 · 117e835
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Showing 4 changed files with 447 additions and 4 deletions.
diff --git a/antver.m b/antver.m
@@ -1020,8 +1020,13 @@
 % generate ppt-file containing previously saved ballNstick plots (previously saved as 'v*tif')
 % #gw --> access via xvol3d (GUI): &#8658; scripts/show scripts
 % 
+% #ba 29 Feb 2024 (10:44:56)
+% #k [xextractslice_aligned] #n new
+% extract 2d-slice from 3D/4D-volume, preserve alignment with original file
+% #gw --> access via ANT-menu: &#8658; 2D/extract slice,preserve alignment
+% 
+% 
 % 
-
 
 
 

diff --git a/antver.md b/antver.md
@@ -1,16 +1,22 @@
 ## **ANTx2 Modifications**
- &#x1F34E; last modification: 27 Feb 2024 (13:49:45) 
+ &#x1F34E; last modification: 29 Feb 2024 (10:44:56) 
 
  &#8658; Respository: <a href= "https://github.com/ChariteExpMri/antx2">GitHub:github.com/ChariteExpMri/antx2</a> 
  &#8658; Tutorials: <a href= "https://chariteexpmri.github.io/antxdoc/">https://chariteexpmri.github.io/antxdoc/</a> 
  &#8658; Templates : <a href= "https://drive.google.com/drive/folders/1q5XOOVLvUYLqYsQJLqNRF7OK8fNwYhI9">googleDrive:animal templates</a> 
 
 
 ------------------ 
+ &#x1F535; <ins>**29 Feb 2024 (10:44:56)**</ins> 
+ __[xextractslice_aligned]__ new 
+ extract 2d-slice from 3D/4D-volume, preserve alignment with original file 
+ &#8618; access via ANT-menu: &#8658; 2D/extract slice,preserve alignment 
+<!---->
  &#x1F535; <ins>**27 Feb 2024 (13:49:45)**</ins> 
  __[vol3dscript_ballnsticks2PPT]__ new script 
  generate ppt-file containing previously saved ballNstick plots (previously saved as 'v*tif') 
  &#8618; access via xvol3d (GUI): &#8658; scripts/show scripts 
+
 <!---->
  &#x1F535; <ins>**23 Feb 2024 (13:14:33)**</ins> 
  __[xcoreg2D_singleSlice_arbSlice]__ new 

diff --git a/mritools/ant/ant.m b/mritools/ant/ant.m
@@ -1369,6 +1369,9 @@ function cmenuCasesCB(h, e, cmenutask,par1)
 mh2 = uimenu(mh,'Label','<html><font color="black"> arbitrary single-slice 2D-registration<font color="red"><i> *different modality', 'Callback',{@menubarCB, 'call_xcoreg2D_singleSlice_arbSlice'},...
  'userdata',[HSTART 'register 3D images via single-slice-pair assigned 2D-registration ' HEND '#'],'separator','off');
 
+mh2 = uimenu(mh,'Label','<html><font color="black"> extract slice, preserve alignment<font color="blue"><i> preserve alignment with inputVolume', 'Callback',{@menubarCB, 'call_xextractslice_aligned'},...
+ 'userdata',[HSTART 'extract single slice from 3D/4D-volume, preserve alignment with inputVolume ' HEND ' '],'separator','on');
+
 %% ==========[menu:Allas & mask]=====================================
 mh = uimenu(f,'Label','atlas+masks');
 
@@ -2024,7 +2027,9 @@ function showfunctionhelp(h,e,hm,hj,isforce)
  msg=regexprep(msg,'<br>',char(10));
  msg=strsplit2(msg,char(10))';
  %msg=cellfun(@(a){['<html><p style="font-family:''Courier New''"> ' a]} ,msg );
- msg=cellfun(@(a){[' #ka ' a repmat(' ',[1 70])]} ,msg );
+ %msg=cellfun(@(a){[' #ka ' a repmat(' ',[1 70])]} ,msg );
+ %msg=cellfun(@(a){[' #ka ' a repmat(' ',[1 70])]} ,msg );
+ try; msg{end+1,1}=repmat('_',[1 70]); end
  msg=[lab2; msg ];
  end
  %uhelp(msg,1);
@@ -2541,7 +2546,20 @@ function showcmd(hlpfun,msg,ishyperlink)
  statusMsg(1,' singleSlice 2D-reg, arbSlice'); %% [exec]
  xcoreg2D_singleSlice_arbSlice(1);
  statusMsg(0)
-
+
+elseif strcmp(task,'call_xextractslice_aligned')
+ if showhelpOnly==1; %% HELP-PARSER: we need the TARGET-FUNCTION here
+ hlpfun='xextractslice_aligned';
+ return ;
+ end
+ if strcmp(u.mousekey,'right') %% [cmd]===========
+ hlpfun='xextractslice_aligned.m';
+ showcmd(hlpfun);
+ return
+ end
+ statusMsg(1,' extract slice (keep aligned)'); %% [exec]
+ xextractslice_aligned(1);
+ statusMsg(0) 
 
  %________________________________________________
 elseif strcmp(task,'xnewproject')