update imports and function calls

cypress/integration/long-running-score.spec.js

@@ -1,6 +1,3 @@
-import {scrollElementIntoCenter, formSelect, select2SingleSelect} from 'tdp_core/dist/cypress/utils';
-import {waitLineupReadyOrdino, checkScoreColLoadedOrdino} from 'ordino/dist/cypress/utils';
-
 // https://www.youtube.com/watch?v=JZIIf-k852g&t=1s
 it('Long Running Score', function() {
  cy.visit(Cypress.env('host'));
@@ -10,7 +7,7 @@ it('Long Running Score', function() {
  cy.login(); // use Cypress command registerd in Ordino app
 
  // Show you can select single genes if you wanted
- scrollElementIntoCenter('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
+ cy.scrollElementIntoCenter('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  cy.get('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  // wait intentionally a few seconds
  cy.wait(2000)
@@ -23,24 +20,24 @@ it('Long Running Score', function() {
  cy.get('[data-testid=normal-chromosome-protein-coding-human-genes-button]').click();
  cy.wait('@gene_desc');
  cy.wait('@human_genes');
- waitLineupReadyOrdino(0)
+ cy.waitLineupReadyOrdino(0)
 
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.wait(2000);
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(2) > span').click();
- select2SingleSelect("data-type", "Relative Copy Number")
- formSelect("aggregation", "Boxplot")
+ cy.select2SingleSelect("data-type", "Relative Copy Number")
+ cy.formSelect("aggregation", "Boxplot")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['Relative Copy Number', 'Boxplot'], 9)
+ cy.checkScoreColLoadedOrdino(0, ['Relative Copy Number', 'Boxplot'], 9)
 
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(2) > span').click();
- formSelect("aggregation", "Frequency")
- formSelect("comparison-operator", "> greater than")
+ cy.formSelect("aggregation", "Frequency")
+ cy.formSelect("comparison-operator", "> greater than")
  cy.get(':nth-child(5) > .form-control').clear();
  cy.get(':nth-child(5) > .form-control').type('4');
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['Frequency > 4'], 10)
+ cy.checkScoreColLoadedOrdino(0, ['Frequency > 4'], 10)
 })

cypress/integration/ordino-video-test.spec.js

@@ -1,6 +1,4 @@
 import { cy, it, Cypress } from 'local-cypress';
-import { waitLineupReadyOrdino, checkScoreColLoadedOrdino} from 'ordino/dist/cypress/utils';
-import { scrollElementIntoCenter, select2MultiSelect, formSelect, select2SingleSelect, waitTdpNotBusy} from 'tdp_core/dist/cypress/utils';
 
 // https://www.youtube.com/watch?v=JZIIf-k852g&t=1s
 it('ordino video', function() {
@@ -11,7 +9,7 @@ it('ordino video', function() {
  cy.login(); // use Cypress command registerd in Ordino app
 
  // Show you can select single genes if you wanted
- scrollElementIntoCenter('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
+ cy.scrollElementIntoCenter('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  cy.get('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  // wait intentionally a few seconds
  cy.wait(2000)
@@ -24,15 +22,15 @@ it('ordino video', function() {
  cy.get('[data-testid=normal-chromosome-protein-coding-human-genes-button]').click();
  cy.wait('@gene_desc');
  cy.wait('@human_genes');
- waitLineupReadyOrdino(0)
+ cy.waitLineupReadyOrdino(0)
 
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(1) > span').click();
- select2MultiSelect("cell-line", "HCC1954")
- select2MultiSelect("data-type", "Relative Copy Number")
+ cy.select2MultiSelect("cell-line", "HCC1954")
+ cy.select2MultiSelect("data-type", "Relative Copy Number")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['HCC1954', 'Relative Copy Number'], 9);
+ cy.checkScoreColLoadedOrdino(0, ['HCC1954', 'Relative Copy Number'], 9);
 
  // Sort by column
  // cy.get('[data-draginfo="Merge"] > .lu-toolbar > .lu-action-sort').click();
@@ -47,18 +45,18 @@ it('ordino video', function() {
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(1) > span').click();
- select2MultiSelect("cell-line", "HCC1954")
- select2MultiSelect("data-type", "Normalized Gene Expression (TPM Values)")
+ cy.select2MultiSelect("cell-line", "HCC1954")
+ cy.select2MultiSelect("data-type", "Normalized Gene Expression (TPM Values)")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['HCC1954', 'Normalized Gene Expression (TPM Values)'], 10)
+ cy.checkScoreColLoadedOrdino(0, ['HCC1954', 'Normalized Gene Expression (TPM Values)'], 10)
 
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(5) > span').click();
- select2MultiSelect("cell-line", "HCC1954")
- select2MultiSelect("data-type", "DRIVE RSA (ER McDonald III et al., Cell, 2017)")
+ cy.select2MultiSelect("cell-line", "HCC1954")
+ cy.select2MultiSelect("data-type", "DRIVE RSA (ER McDonald III et al., Cell, 2017)")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['HCC1954', 'DRIVE RSA (ER McDonald III et al., Cell, 2017)'], 11)
+ cy.checkScoreColLoadedOrdino(0, ['HCC1954', 'DRIVE RSA (ER McDonald III et al., Cell, 2017)'], 11)
 
  // Invert column
  // Here the title should be used. For some reason cypress has problmes, because there is a " character in the title. For now I use the data-id
@@ -70,53 +68,53 @@ it('ordino video', function() {
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(2) > span').click();
- formSelect("row-1", "Tumor Type")
- select2MultiSelect("row-1", "breast carcinoma")
- select2SingleSelect("data-type", "Normalized Gene Expression (TPM Values)")
+ cy.formSelect("row-1", "Tumor Type")
+ cy.select2MultiSelect("row-1", "breast carcinoma")
+ cy.select2SingleSelect("data-type", "Normalized Gene Expression (TPM Values)")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['Tumor Type', 'breast carcinoma', 'Normalized Gene Expression (TPM Values)'], 12)
+ cy.checkScoreColLoadedOrdino(0, ['Tumor Type', 'breast carcinoma', 'Normalized Gene Expression (TPM Values)'], 12)
 
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.wait(2000);
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(2) > span').click();
- select2SingleSelect("data-type", "Relative Copy Number")
- formSelect("aggregation", "Boxplot")
+ cy.select2SingleSelect("data-type", "Relative Copy Number")
+ cy.formSelect("aggregation", "Boxplot")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['Relative Copy Number', 'Boxplot'], 13)
+ cy.checkScoreColLoadedOrdino(0, ['Relative Copy Number', 'Boxplot'], 13)
 
  // Add column
  cy.get('[data-testid=add-column-button]').click();
  cy.get('[data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(2) > span').click();
- formSelect("aggregation", "Frequency")
- formSelect("comparison-operator", "> greater than")
+ cy.formSelect("aggregation", "Frequency")
+ cy.formSelect("comparison-operator", "> greater than")
  cy.get(':nth-child(5) > .form-control').clear();
  cy.get(':nth-child(5) > .form-control').type('4');
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(0, ['Frequency > 4'], 14)
+ cy.checkScoreColLoadedOrdino(0, ['Frequency > 4'], 14)
 
  // Select elements and click on detail views
- waitLineupReadyOrdino(0)
+ cy.waitLineupReadyOrdino(0)
  cy.get('[data-index="0"] > .lu-renderer-selection').click();
  cy.get('[data-testid=celllinedb_expression_vs_copynumber]').click();
- waitTdpNotBusy()
- waitLineupReadyOrdino(0)
+ cy.waitTdpNotBusy()
+ cy.waitLineupReadyOrdino(0)
  cy.wait(2000)
  cy.get('[data-index="6"] > .lu-renderer-selection').click();
- waitTdpNotBusy()
- waitLineupReadyOrdino(0)
+ cy.waitTdpNotBusy()
+ cy.waitLineupReadyOrdino(0)
  cy.wait(2000)
  cy.get('[data-index="6"] > .lu-renderer-selection').click();
- waitTdpNotBusy()
+ cy.waitTdpNotBusy()
  cy.wait(2000)
  cy.get('[data-testid=targetvalidation]').click();
- waitTdpNotBusy()
+ cy.waitTdpNotBusy()
  cy.wait(2000)
  cy.get('[data-testid=ensembl_org]').click();
- waitTdpNotBusy()
+ cy.waitTdpNotBusy()
  cy.wait(2000)
  cy.get('[data-testid=copynumbertable]').click();
- waitTdpNotBusy()
+ cy.waitTdpNotBusy()
  cy.wait(2000)
 
  // Sort and filter columns
@@ -131,22 +129,22 @@ it('ordino video', function() {
  // Add column
  cy.get('[data-testid=viewWrapper-1] [data-testid=side-panel-wrapper] [data-testid=lu-adder-div] [data-testid=add-column-button]').click();
  cy.get('[data-testid=viewWrapper-1] > .view > .inner > .tdp-view > [data-testid=side-panel-wrapper] > .panel-header > :nth-child(2) > [data-testid=lu-adder-div] > .lu-search > .lu-search-list > :nth-child(2) > ul > :nth-child(1) > span').click();
- select2MultiSelect("gene-symbol", ["BRCA1", "BRCA2"])
- select2MultiSelect("data-type", "AA Mutated")
+ cy.select2MultiSelect("gene-symbol", ["BRCA1", "BRCA2"])
+ cy.select2MultiSelect("data-type", "AA Mutated")
  cy.get('[data-testid=primary-dialog-button]').click();
- checkScoreColLoadedOrdino(1, ['BRCA1', 'AA Mutated'], 10)
- checkScoreColLoadedOrdino(1, ['BRCA2', 'AA Mutated'], 10)
+ cy.checkScoreColLoadedOrdino(1, ['BRCA1', 'AA Mutated'], 10)
+ cy.checkScoreColLoadedOrdino(1, ['BRCA2', 'AA Mutated'], 10)
 
- waitLineupReadyOrdino(1)
+ cy.waitLineupReadyOrdino(1)
  cy.get('[data-testid=viewWrapper-1] [data-index="0"] > .lu-renderer-selection').click();
  cy.get('[data-testid=viewWrapper-1] [data-index="1"] > .lu-renderer-selection').click();
  cy.get('[data-testid=cosmic]').click();
  // Intentionally wait 2 seconds
- waitTdpNotBusy()
+ cy.waitTdpNotBusy()
  cy.wait(2000)
  cy.get('[data-testid=show] [data-testid=form-select]').select('907046');
  // Intentionally wait 2 seconds
- waitTdpNotBusy()
+ cy.waitTdpNotBusy()
  cy.wait(2000)
  cy.get('[data-testid=ordino_sessions_shortcut-link]').click();
  cy.get('[data-testid=current-session-sessionscard] [data-testid=ordino0] [data-testid=save-button]').click();

cypress/integration/session_all_celllines.spec.js

@@ -1,6 +1,3 @@
-import {scrollElementIntoCenter} from 'tdp_core/dist/cypress/utils';
-import {waitLineupReadyOrdino} from 'ordino/dist/cypress/utils';
-
 it('Load all Celllines', function() {
  cy.visit(Cypress.env('host'));
 
@@ -10,7 +7,7 @@ it('Load all Celllines', function() {
  cy.login(); // use Cypress command registerd in Ordino app
 
  // Show you can select single genes if you wanted
- scrollElementIntoCenter('[data-testid=dataset-card-cellline-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
+ cy.scrollElementIntoCenter('[data-testid=dataset-card-cellline-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  cy.get('[data-testid=dataset-card-cellline-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  // wait intentionally a few seconds
  cy.wait(2000)
@@ -23,5 +20,5 @@ it('Load all Celllines', function() {
  cy.get('[data-testid=ccle-button]').click();
  cy.wait('@cellline_desc');
  cy.wait('@human_cellline');
- waitLineupReadyOrdino(0)
+ cy.waitLineupReadyOrdino(0)
 });

cypress/integration/session_all_genes.spec.js

@@ -1,6 +1,3 @@
-import {scrollElementIntoCenter} from 'tdp_core/dist/cypress/utils';
-import {waitLineupReadyOrdino} from 'ordino/dist/cypress/utils';
-
 it('Load all Genes', function() {
  cy.visit(Cypress.env('host'));
 
@@ -10,7 +7,7 @@ it('Load all Genes', function() {
  cy.login(); // use Cypress command registerd in Ordino app
 
  // Show you can select single genes if you wanted
- scrollElementIntoCenter('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
+ cy.scrollElementIntoCenter('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  cy.get('[data-testid=dataset-card-genes-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  // wait intentionally a few seconds
  cy.wait(2000)
@@ -23,5 +20,5 @@ it('Load all Genes', function() {
  cy.get('[data-testid=normal-chromosome-protein-coding-human-genes-button]').click();
  cy.wait('@gene_desc');
  cy.wait('@human_genes');
- waitLineupReadyOrdino(0)
+ cy.waitLineupReadyOrdino(0)
 });

cypress/integration/session_all_tissues.spec.js

@@ -1,6 +1,3 @@
-import {scrollElementIntoCenter} from 'tdp_core/dist/cypress/utils';
-import {waitLineupReadyOrdino} from 'ordino/dist/cypress/utils';
-
 it('Load all Tissues', function() {
  cy.visit(Cypress.env('host'));
 
@@ -10,7 +7,7 @@ it('Load all Tissues', function() {
  cy.login(); // use Cypress command registerd in Ordino app
 
  // Show you can select single genes if you wanted
- scrollElementIntoCenter('[data-testid=dataset-card-tissue-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
+ cy.scrollElementIntoCenter('[data-testid=dataset-card-tissue-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  cy.get('[data-testid=dataset-card-tissue-dataset] [data-testid=human-tab] [data-testid=ordino-dataset-searchbox] [data-testid=async-paginate-input]').click()
  // wait intentionally a few seconds
  cy.wait(2000)
@@ -23,5 +20,5 @@ it('Load all Tissues', function() {
  cy.get('[data-testid=tcga-normals-button]').click();
  cy.wait('@tissue_desc');
  cy.wait('@human_tissue');
- waitLineupReadyOrdino(0)
+ cy.waitLineupReadyOrdino(0)
 });