COMBINE-lab salmon Q A Single Cell Specific · Discussions · GitHub

Q&A (single-cell specific) Discussions

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Raise maximum barcode length

kaukrise asked Nov 6, 2019 in Q&A (single-cell specific) · Answered

9
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Detected a *potential* strand bias > 1% in an unstranded protocol

kumarage asked Apr 21, 2024 in Q&A (single-cell specific) · Unanswered

0
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Fragment assignments to transcripts

Ray6283 asked Oct 17, 2023 in Q&A (single-cell specific) · Answered

7
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Accessing the read-level matrix from Alevin

rob-p asked May 26, 2022 in Q&A (single-cell specific) · Unanswered

0
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Old vs New Velocity Tutorial

ACastanza asked Nov 6, 2021 in Q&A (single-cell specific) · Unanswered

2
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alevin library type for 10x Chromium v3

deevdevil88 asked Jun 17, 2021 in Q&A (single-cell specific) · Unanswered

4
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Alevin with 10x 5' v2

JLTrincado asked Apr 16, 2021 in Q&A (single-cell specific) · Answered

1
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alevin: the --whitelist flag

eudoraleer asked Apr 8, 2021 in Q&A (single-cell specific) · Unanswered

2
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feature barcoding data (like CITE-seq) is taking too much time to process

k3yavi asked Feb 12, 2021 in Q&A (single-cell specific) · Answered

1
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alevin: Almost no overlapping cell barcodes between GEX and HTO libraries

ivanek asked Oct 20, 2020 in Q&A (single-cell specific) · Answered

12
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alevin: Question related to noisy reads, whitelisting, and emptyDrops

imranfanaswala asked Apr 14, 2020 in Q&A (single-cell specific) · Answered

3
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alevin: is it possible to change order of UMI and CB in R1?

DrHogart asked Mar 14, 2020 in Q&A (single-cell specific) · Unanswered

2