Psoriasis spatial transcriptomics with Nanostring GeoMX

Running the analysis

Build the singularity container:

 sudo singularity build runAnalysis.img Singularity

Run the analysis and render the html notebooks with a single command:
```
 ./runAnalysis.img
```

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
data		data
figures		figures
install		install
results		results
src		src
.gitignore		.gitignore
01_QualityControl.qmd		01_QualityControl.qmd
02_GeoDiffProcessing.qmd		02_GeoDiffProcessing.qmd
03_Normalisation.qmd		03_Normalisation.qmd
04_EDA.qmd		04_EDA.qmd
05_DifferentialExpressionDisease.qmd		05_DifferentialExpressionDisease.qmd
06_DifferentialExpressionCell.qmd		06_DifferentialExpressionCell.qmd
07_FunctionalEnrichment.qmd		07_FunctionalEnrichment.qmd
08_SpatialDeconvolution.qmd		08_SpatialDeconvolution.qmd
09_LigandReceptorSignalling.qmd		09_LigandReceptorSignalling.qmd
10_NCounterAnalysis.qmd		10_NCounterAnalysis.qmd
11_ComparePsorasisMicroarray.qmd		11_ComparePsorasisMicroarray.qmd
12_CompareADMicroarray.qmd		12_CompareADMicroarray.qmd
13_AssembleFigures.qmd		13_AssembleFigures.qmd
14_CreateTables.qmd		14_CreateTables.qmd
README.md		README.md
Singularity		Singularity
_quarto.yml		_quarto.yml
runAnalysis.R		runAnalysis.R