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NetProphet_2.0
NetProphet_2.0 PublicA “data light” TF-network mapping algorithm using only gene expression and genome sequence data.
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Dual_Threshold_Optimization
Dual_Threshold_Optimization PublicDual threshold optimization for identifying convergent evidence: TF binding locations and TF perturbation responses.
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TFPertRespExplainer
TFPertRespExplainer PublicPredict genes' response to perturbations and explains which genomic factors determine the response predictions.
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Repositories
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A development environment to explore implementations of deep neural networks for predicting the relationship between transcription factor and target genes using binding and perturbation data
BrentLab/yeastdnnexplorer’s past year of commit activity - callvariants Public
A variant calling workflow suitable for both checking genotypes and processing data for BSA experiments
BrentLab/callvariants’s past year of commit activity - trace_recalling Public
Trace Recalling is a novel method for deconvoluting double traces that result from simultaneously sequencing two DNA templates. Trace Recalling identifies up to two bases at each position of such a trace.
BrentLab/trace_recalling’s past year of commit activity - YeastCallingCardsDB Public
A Django managed shiny app for storing and visualizing Yeast Calling Cards data
BrentLab/YeastCallingCardsDB’s past year of commit activity - brentlabRnaSeqTools Public
BrentLab/brentlabRnaSeqTools’s past year of commit activity
