Brannigan Lab
- 6 followers
- United States of America
- https://branniganlab.org
- https://x.com/branniganlab?lang=en
- grace.brannigan@rutgers.edu
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Repositories
- blobulator Public
Blob-based analysis of protein sequences - available online at blobulator.branniganlab.org and as an open-source tool.
BranniganLab/blobulator’s past year of commit activity - Communications Public
An archival repository for all *completed* communications produced by the Brannigan Lab - posters/presentations, grants, manuscripts, theses, etc.
BranniganLab/Communications’s past year of commit activity - density_threshold_affinity Public
Scripts to Assist Density Threshold Affinity Analysis - a method for obtaining free energies of protein-lipid binding. Originally described in: https://pubs.aip.org/aip/jcp/article/154/18/185102/200265/Spontaneous-lipid-binding-to-the-nicotinic and subsequently refined in: https://doi.org/10.1016/bs.mie.2024.03.008
BranniganLab/density_threshold_affinity’s past year of commit activity - safep Public
Tools for Analyzing and Debugging (SA)FEP calculations. See also the SAFEP Tutorial: https://github.com/jhenin/SAFEP_tutorial/tree/main Documentation: https://safep-alchemy.readthedocs.io/en/latest/
BranniganLab/safep’s past year of commit activity - densitymap Public
This project has moved to: https://github.com/BranniganLab/density_threshold_affinity. VMD and python tools for calculating and plotting 2D lipid density maps.
BranniganLab/densitymap’s past year of commit activity - ELIC-phospholipid-identification Public
Data and Analyses related to "Structural mechanism of leaflet-specific phospholipid modulation of a pentameric ligand-gated ion channel". Results in preprint (bioRxiv) 2022. doi: https://doi.org/10.1101/2022.06.07.494883
BranniganLab/ELIC-phospholipid-identification’s past year of commit activity - lipid-monte-carlo Public
Monte Carlo simulation of the Brannigan&Brown flexible lipid model. This is C code that GB wrote primarily as a graduate student.
BranniganLab/lipid-monte-carlo’s past year of commit activity