add py-cwl-registry and py-cwl-luigi (#1795)

* add py-cwl-registry and py-cwl-luigi
* add bba_data_push on behalf of DKE

bluebrain/repo-bluebrain/packages/py-bba-data-push/package.py

@@ -0,0 +1,30 @@
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyBbaDataPush(PythonPackage):
+ """CLIs that take in input atlas pipeline datasets and push them into Nexus
+ """
+ homepage = "https://bbpgitlab.epfl.ch/dke/apps/blue_brain_atlas_nexus_push"
+ git = "ssh:https://[email protected]/dke/apps/blue_brain_atlas_nexus_push.git"
+
+ version('1.0.3', tag='v1.0.3')
+
+ depends_on('py-setuptools', type=('build', 'run'))
+
+ depends_on('py-nexusforge', type=('build', 'run'))
+ depends_on('py-click', type=('build', 'run'))
+ depends_on('py-numpy', type=('build', 'run'))
+ depends_on('py-h5py', type=('build', 'run'))
+ depends_on('py-pynrrd', type=('build', 'run'))
+ depends_on('py-pyyaml', type=('build', 'run'))
+ depends_on('py-pyjwt', type=('build', 'run'))
+
+ depends_on('py-pytest', type=('test', 'build', 'run'))
+ depends_on('py-pytest-cov', type=('test', 'build', 'run'))
+
+ @run_after('install')
+ @on_package_attributes(run_tests=True)
+ def test_install(self):
+ python("-m", "pytest", "tests")

bluebrain/repo-bluebrain/packages/py-cwl-luigi/package.py

@@ -0,0 +1,28 @@
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyCwlLuigi(PythonPackage):
+ """Luigi wrapper for CWL workflows
+ """
+ homepage = "https://bbpgitlab.epfl.ch/nse/cwl-luigi"
+ git = "ssh:https://[email protected]/nse/cwl-luigi.git"
+
+ version('develop', branch='main')
+ version('0.3.0', tag='cwl-luigi-v0.3.0')
+
+ depends_on('[email protected]:', type=('build', 'run'))
+
+ depends_on('py-setuptools', type=('build', 'run'))
+
+ depends_on("[email protected]:", type=('build', 'run'))
+ depends_on('[email protected]:', type=('build', 'run'))
+ depends_on('py-luigi', type=('build', 'run'))
+ depends_on('py-pyyaml', type=('build', 'run'))
+ depends_on('py-cwl-registry', type=('build', 'run'))
+
+ @run_after('install')
+ @on_package_attributes(run_tests=True)
+ def test_install(self):
+ python("-m", "pytest", "tests")

bluebrain/repo-bluebrain/packages/py-cwl-registry/package.py

@@ -0,0 +1,30 @@
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyCwlRegistry(PythonPackage):
+ """Workflows registered in CWL format
+ """
+ homepage = "https://bbpgitlab.epfl.ch/nse/cwl-registry"
+ git = "ssh:https://[email protected]/nse/cwl-registry.git"
+
+ version('develop', branch='main')
+ version('0.3.0', tag='cwl-registry-v0.3.0')
+
+ depends_on('[email protected]:', type=('build', 'run'))
+
+ depends_on('py-setuptools', type=('build', 'run'))
+
+ depends_on("[email protected]:", type=('build', 'run'))
+ depends_on('py-voxcell', type=('build', 'run'))
+ depends_on('py-numpy', type=('build', 'run'))
+ depends_on('py-pandas', type=('build', 'run'))
+ depends_on('py-libsonata', type=('build', 'run'))
+ depends_on('py-nexusforge', type=('build', 'run'))
+ depends_on('py-bba-data-push', type=('build', 'run'))
+
+ @run_after('install')
+ @on_package_attributes(run_tests=True)
+ def test_install(self):
+ python("-m", "pytest", "tests")