Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add cas12 #1

Open
wants to merge 1 commit into
base: main
Choose a base branch
from
Open

add cas12 #1

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
add cas12
  • Loading branch information
@orangeSi
orangeSi committed Sep 26, 2022
commit 2f6c7281ceac1470ea27a4b4e4f7d6fdb443e199
4 changes: 2 additions & 2 deletions modules/pipelines.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -249,7 +249,7 @@ def _pipeline_run(self):
if acc_num not in dict_all_cas:
all_cas_intervals = []
else:
all_cas_intervals = [key for key, value in dict_all_cas[acc_num].items() if value == "cas9"]
all_cas_intervals = [key for key, value in dict_all_cas[acc_num].items() if value == "cas9" or value == "cas12"]
#all_cas_intervals = [string_tuple_to_tuple(interval) for interval in all_cas_intervals]

interval_tracr_rna_anti_repeat = (int(anti_repeat_start), int(anti_repeat_end))
Expand Down Expand Up @@ -358,4 +358,4 @@ def _run_model_search(self):
print("\n\t\tPerforming anti-repeat search")
anti_repeat_search_type_v(self.summary_file_name, ",", self.summary_file_name)

filter_csv_file_model_run(self.summary_file_name, self.summary_file_name, 0.0001, 30)
filter_csv_file_model_run(self.summary_file_name, self.summary_file_name, 0.0001, 30)