Testsuite logging #166
Workflow file for this run
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| # ----------------------------------------------------------------------------- | |
| # | |
| # Copyright (c) 2017 Sam Cox, Roberto Sommariva | |
| # | |
| # This file is part of the AtChem2 software package. | |
| # | |
| # This file is covered by the MIT license which can be found in the file | |
| # LICENSE.md at the top level of the AtChem2 distribution. | |
| # | |
| # ----------------------------------------------------------------------------- | |
| name: AtChem2-CI | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| pull_request: | |
| branches: [ master ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # Triggers when pushed to the master (either by merging a Pull Request, or direct commit to master) | |
| push: | |
| branches: | |
| - master | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on - we use a matrix to run on two OSs | |
| # runner images are described here: https://github.com/actions/runner-images | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, macos-11, macos-12] | |
| fortran: [9, 10, 11] | |
| fail-fast: false | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 2 | |
| # ------------------------------------------------------------- | |
| # Install gfortran - if not supplied on this OS image | |
| # macOS-11 only | |
| - name: Install gfortran-9 on macOS-11 | |
| if: matrix.os == 'macos-11' && matrix.fortran == 9 | |
| run: brew install gcc@${{ matrix.fortran }} | |
| # macOS-12 only | |
| - name: Install gfortran-9 or gfortran-10 on macOS-12 | |
| if: matrix.os == 'macos-12' && (matrix.fortran == 9 || matrix.fortran == 10) | |
| run: brew install gcc@${{ matrix.fortran }} | |
| # ------------------------------------------------------------- | |
| # Install cvode | |
| # ubuntu only | |
| - name: Install cvode (ubuntu) | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: ./tools/install/install_cvode.sh $PWD $(which gfortran-${{ matrix.fortran }}) | |
| # macOS only | |
| - name: Install cvode (macOS) | |
| if: startsWith(matrix.os, 'macos') | |
| run: ./tools/install/install_cvode.sh $PWD $(which gfortran-${{ matrix.fortran }}) | |
| # ------------------------------------------------------------- | |
| # Install all other dependencies | |
| # both OSs | |
| - name: Install openlibm | |
| run: ./tools/install/install_openlibm.sh $PWD | |
| - name: Install numdiff | |
| run: ./tools/install/install_numdiff.sh $PWD | |
| - name: Install fruit | |
| run: sudo ./tools/install/install_fruit.sh $PWD | |
| # ------------------------------------------------------------- | |
| # Build AtChem2 and run all tests | |
| - name: Build AtChem2 | |
| # Set FORT_VERSION for use inside the Makefile (called from build_atchem2.sh) | |
| env: | |
| FORT_VERSION: ${{ matrix.fortran }} | |
| run: | | |
| cp tools/install/Makefile.skel Makefile | |
| ./build/build_atchem2.sh ./model/mechanism.fac | |
| if [ $RUNNER_OS != 'Linux' ] ; then | |
| install_name_tool -change libopenlibm.4.dylib $PWD/openlibm-0.8.1/libopenlibm.4.dylib atchem2 ; | |
| install_name_tool -change @rpath/libsundials_cvode.2.dylib $PWD/cvode/lib/libsundials_cvode.dylib atchem2 ; | |
| install_name_tool -change @rpath/libsundials_fnvecserial.2.dylib $PWD/cvode/lib/libsundials_fnvecserial.dylib atchem2 ; | |
| install_name_tool -change @rpath/libsundials_nvecserial.2.dylib $PWD/cvode/lib/libsundials_nvecserial.dylib atchem2 ; | |
| fi | |
| # ------------------------------------------------------------- | |
| - name: Indent and style tests | |
| run: | | |
| make indenttest | |
| make styletest | |
| # ------------------------------------------------------------- | |
| - name: Run AtChem2 | |
| run: | | |
| # Run Atchem2 | |
| ./atchem2 | |
| # Upload 'build' coverage to codecov | |
| if [[ "$RUNNER_OS" == "Linux" ]]; then sudo ln -f -s /usr/bin/gcov-${{ matrix.fortran }} /usr/bin/gcov ; bash <(curl -s https://codecov.io/bash) -F build ; fi | |
| # ------------------------------------------------------------- | |
| - name: Run tests | |
| # Set FORT_VERSION for use inside the Makefile | |
| env: | |
| FORT_VERSION: ${{ matrix.fortran }} | |
| run: | | |
| # Run unit tests | |
| export PATH=$PATH:$PWD/numdiff/bin | |
| make unittests | |
| # Upload 'unittests' coverage to codecov | |
| if [[ "$RUNNER_OS" == "Linux" ]]; then sudo ln -f -s /usr/bin/gcov-${{ matrix.fortran }} /usr/bin/gcov ; bash <(curl -s https://codecov.io/bash) -F unittests ; fi | |
| make clean | |
| # Run full build tests - this will upload 'tests' coverage to codecov for each test | |
| make oldtests | |
| make modeltests |