Quickly search, compare, and analyze genomic and metagenomic data sets.

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

Novelty-inclusive microbial community profiling of shotgun metagenomes

More scalable dereplication for metagenome assembled genomes

GraftM - Rapid community profiles from metagenomes

Strain resolver for metagenomics

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

A fast multi-threaded k-mer counter

bedtools - the swiss army knife for genome arithmetic

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Opinionated Python utilities used in the bird suite of bioinformatic tools, developed by the Woodcroft lab

A hybrid assembly and MAG recovery pipeline (and more!)

Assessing the quality of metagenome-derived genome bins using machine learning

Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes

GraphQL plugin for SearchObject gem

Collection of rspec matchers to test your graphQL api schema.

Ruby implementation of GraphQL

Useful bash one-liners for bioinformatics.