This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…

List of IARC bioinformatics nextflow pipelines

Analysis of single cell RNA-seq data course

Slow-paced 4-day containers and Nextflow course for beginners.

The Less Obvious Conference Checklist

My CV created in R

Sam Abbott's Curriculum Vitae

Official code repository for GATK versions 4 and up

An opinionated lightweight template for smooth targets flows.

How to set up a literature bot on Bluesky

Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.

A curated list of bioinformatics bench-marking papers and resources.

Easy single cell analysis platform for enrichment

Learn about text mining 📄 with tidy data principles

Function-oriented Make-like declarative workflows for R

Short lessons from FAS Informatics coffee hour

data and model repository for single-cell data

Lecture Notes on Computational and Mathematical Population Genetics

Apéro is a Hugo theme for personal websites. This is the documentation site, made with the theme 🍋

Repository to host tool-specific module files for the Nextflow DSL2 community!

simple comparison of snakemake, nextflow and cromwell/wdl

Inferring CNV from Single-Cell RNA-Seq

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Workshop material for BioC Asia 2019

This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage projects, publish materials, create code, etc.

Course on good practice in bioinformatics

⭐ Use repo badges (build passing, coverage, etc) in your readme/markdown file to signal code quality in a project.