This repository holds the BASH shell and python source code of programs used to preprocess and analyze the dMRI data for the CAN-BIND-1 study.
Version 1.0 of this code was used the produce the manuscript by Davis et al.: "White Matter Indices of Medication Response in Major Depression".
The code release associated with this publication has a DOI:
Version 2.0 was used to produce the manuscript by Davis et al.: "Biophysical compartment models for single-shell diffusion MRI in the human brain: a model fitting comparison".
The code release associated with this publication is available at the following tagged commit: https://github.com/AndrewDDavis/can-bind-dmri/releases/tag/v2.0
The data files and code/script repository typically live in ~/Documents/Research_Projects/CBN01_dMRI. The notes and manuscripts associated with the analysis live in ~/Sync/Research_Projects/CBN01_dMRI/doc, and the results live in ~/Sync/Research_Projects/CBN01_dMRI/group_results.
To add the bin directory of this project in the typical location to your PATH variable, use:
export PATH=~/Documents/Research_Projects/CBN01_dMRI/bin:"$PATH"
Davis, Andrew D., Stefanie Hassel, Stephen R. Arnott, Jacqueline Harris, Raymond W. Lam, Roumen Milev, Susan Rotzinger, Mojdeh Zamyadi, Benicio N. Frey, Luciano Minuzzi, Stephen C. Strother, Glenda M. MacQueen, Sidney H. Kennedy, and Geoffrey B. Hall. "White Matter Indices of Medication Response in Major Depression; a Diffusion Tensor Imaging Study". Submitted for publication
Andrew D. Davis, Stefanie Hassel, Stephen R. Arnott, Geoffrey B. Hall, Jacqueline K. Harris, Mojdeh Zamyadi, Jonathan Downar, Benicio N. Frey, Raymond W. Lam, Sidney H. Kennedy, Stephen C. Strother. "Biophysical compartment models for single-shell diffusion MRI in the human brain: a model fitting comparison". Submitted for publication
Andrew D. Davis, PhD
Postdoctoral Fellow, University of Toronto
Rotman Research Institute
Baycrest Health Sciences
3560 Bathurst Street, North York
Ontario, Canada M6A 2E1