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1. vcfPytools vcfPytools Public

   vcf file manipulation

   Python 20 3

2. vcfCTools vcfCTools Public

   C++ implementation of vcfPytools. The layout of the code is based on bamtools by Derek Barnett.

   C++ 6

3. bosCoPipe bosCoPipe Public

   Provides scripting for alignment and variant calling

   Perl 1

4. BamChecker BamChecker Public

   Tool for checking Mosaik BAM integrity

   C++ 1

5. mutateRef mutateRef Public

   Mutate reference sequence

   Python 1

6. configurationClass configurationClass Public

   Library for handling tool and pipeline configuration files

   Python 1